FastQCFastQC Report
Thu 1 Sep 2022
EGAF00000888043

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000888043
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences90556
Sequences flagged as poor quality0
Sequence length151
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCAAAACTCAACAACCTAAACCCCGAAAATAACTACTAAACTACCTACCG51455.681567207032113No Hit
CCCAAAATCCTAAAATTCTCCTAACCACAAAAACTCCCCACAAAAACAAA38304.229427094836344No Hit
AAAATTAACCTAAAAATCCCCACAACCTTAACTCTACCTATATTCCCACA30673.3868545430451875No Hit
ACTAAATAAAAACTTACCCAACCCCACTCTACCAATCCCCTTCCTCCCAT27173.000353372498785No Hit
ATATAATACCCACCTTCCAAACCACGAACCCGCAACCCAATCCTAAAAAC25432.808207076284288No Hit
CTCCAAACTACAAAAAACTCCTTCAAATCACCTATCCACCTCCTAAAACA23182.559742038075887No Hit
ACAAACCAACCTAAATTAAAATCCCAACTCCTTAATAACCGTCCTAACCT21962.4250187729139983No Hit
CCAAAAAAACCAACAAAAAAACTAAATAAAACCGAAAACTTCTCCATCTT19862.1931180705861566No Hit
ATATCTCCTTACATCCCAACCTCATCTATACAACAAAAAACCAAAAACTT18322.0230575555457397No Hit
CCAACCACTCCCTAAAAATCCCCCCAAAAAAACCTATTACATCTACTCCG17681.9523830557886832No Hit
TAATACCAACTATACCACTCAACTCCGAAAAATTACCTTCCAAAAACTCT16081.775696806396042No Hit
CCCTTTAAACTATCCCACCTTTCTAAACGAAACCAATATACATCTTAAAT14511.6023234241795132No Hit
ACCAAACAACCAAACTAAACAACGCTAAAAACGAAAAACCCAAATATCCT14001.5460046821856088No Hit
AATCTAAAAACCTCCTCTCCAAAACTAAATCTTACACACCCCCAAAATTA12711.4035513936127921No Hit
CCACCTAAACTCCTATAAAAAAATCACCCAACTACCGAAACCCATTCGAA12511.3814656124387121No Hit
ACACTCTAAAATTTCCCCTAAAAAACTAATTCAAACCATAACGAAAAATA12171.3439197844427757No Hit
ACTACAAACCCTACAACAAATCCATACCCCCCGCCACGACCCGAACACTA11891.3129996907990635No Hit
TACCTTCCAAAAACTCTAAACATCCCCATACAACTACAAAACACCCAAAA11521.2721409956270153No Hit
AACTAATCTAAACCTCCTAACCTCAAACGATCTATCTACTTCTACCTCCG11041.2191351208092231No Hit
CCAACCACTCCCTAAAAATCCCCCCAAAAAAACCTATTACATCTACTCCA10731.1849021599893987No Hit
TCTCTTTACATTTAATCAAAAACCCAAAAAATTAAACAAAACGTCTAAAA10521.1617120897566147No Hit
AAAATTTAATCCTCAATCCAATCCTAAACCACCAACATCCTCTATTAATC10431.1517734882282786No Hit
TCCCTAATCTCAAAAAACATAAACTAACTCTAAAACCAAAAATTTCGATT10221.1285834179954946No Hit
CTCCCAACCCCCACTCCTAAACACACCATTCCAAAACATATCCTAAACCA9761.0777861212951103No Hit
TCTCAAACCTACTACCTAAAAACCTCATCCGCATAATACAACCTAAATCC9531.052387472944918No Hit
CTCCCAACCCCCACTCCTACCTAAATTCCACAACTTCTGTAGAACCATGT9161.0115287777728699No Hit
TAAAACTCACTACTATCCCCCACAAACTAAAACTAAAAAACAAACTCTAA8850.9772958169530456No Hit
TAATACCAACTATACCACTCAACTCCAAAAAATTACCTTCCAAAAACTCT8480.9364371217809975No Hit
CCCTAAAAACAAACTAAAACTATAAAAAAAAAAATTCCACTAACCCCGAA8150.8999955828437652No Hit
ACTACAAACCCTACAACAAATCCATGCCCCCCGCCACAACCCGAACACTA7930.8757012235522771No Hit
AAATAATAACATTAAATACTCCTCCCAACTTAACCAAACTTAAATCCTCC7880.870179778258757No Hit
ACACTCTAAAATTTCCCCTAAAAAACTAATTCAAACCATAACAAAAAATA7470.8249039268518927No Hit
ACAAACCAACCTAAATTAAAATCCCAACTCCTTAATAACCATCCTAACCT7420.8193824815583728No Hit
AATCTAAAAACCTCCTCTCCAAAACTAAATCTTACACGCCCCCAAAATTA6760.7464994036839083No Hit
CAAATCCCTAATCTCACCTAAAAAAAAAAACTCTACTAACCCATCTCCGA6660.7354565130968682No Hit
CCTAAAACAAACTAATACCACCCACTAAACGAAAACGAAACCCTAAAAAA6460.7133707319227881No Hit
ACTACAAACCCTACAACAAATCCATACCCCCCGCCACAACCCGAACACTA6110.6747206148681479No Hit
CAAATCCCTAATCTCACCTAAAAAAAAAACTCTACTAACCCATCTCCGAA6100.6736163258094439No Hit
ACTAAATAAAAACTTACCCAACCCCGCTCTACCAATCCCCTTCCTCCCAT5900.6515305446353638No Hit
AAATAATAACATTAAATACTCCTCCCAATCCTCCCCGTTTTCCTCCTCCC5690.6283404744025796No Hit
CCCTAAAAACAAACTAAAACTATAAAAAAAAAATTCCACTAACCCCGAAC5630.6217147400503555No Hit
AACCTTTATTTAATCAAAACTACTTAATTCAAAAAATATCCACATTACTC5340.5896903573479394No Hit
CCTAAAACAAACTAATACCACCCACTAAACGAAAACGAAACCCCGAAAAA5310.5863774901718274No Hit
TACCTTCCAAAAACTCTAAACATCCCCGTACAACTACGAAACACCCGAAA4970.5488316621758912No Hit
AACAACAATATTTCCTAATCCTCCCAACTAAAAAAAAAAACCCCCCCAAC4750.524537302884403No Hit
TACCTTCCAAAAACTCTAAACATCCCCATACAACTACAAAACACCCGAAA4590.5068686779451389No Hit
CCAAAACTCAACAACCTAAACCCCGAAAATAACTACTGAACTACCTACCG4560.5035558107690269No Hit
TCTCAAACCTACTACCTAAAAACCTCATCCACATAATACAACCTAAATCC4540.5013472326516188No Hit
TCTCTTTACATTTAATCAAAAACCCAAAAAATTAAACAAAACATCTAAAA4490.49582578735809885No Hit
AACAACAATATTTCCTAATCCTCCCAACTAAAAAAAAAAAACCCCCCCAA4260.4704271390079067No Hit
ACTACAAACCCTACAACAAATCCATACCCCCCACCACGACCCGAACACTA3990.4406113344228985No Hit
AACCTTTATTTAATCAAAACTACTTAATTCAAAAAATATCCACGTTACTC3750.4141083970140024No Hit
AAAAACTAACACACACTTATACCCCCGAAACAACCATAAATACACAAAAA3650.40306550642696226No Hit
CAAATCCCTAATCTCACCTAAAAAAAAACTCTACTAACCCATCTCCGAAT3340.36883254560713813No Hit
CAAATCCCTAATCTCACCTAAAAAAAAAAACTCTACTAACCCATCTCCAA3050.33680816290472193No Hit
TAATACCAACTATACCACTCAACTCCTAAAAATTACCTTCCAAAAACTCT3040.33570387384601796No Hit
ATATAATACCCACCTTCCAAACCACTAACCCGCAACCCAATCCTAAAAAC2970.3279738504350899No Hit
CCCTAAAAACAAACTAAAACTATAAAAAAAAAAAATTCCACTAACCCCGA2930.32355669420027383No Hit
AACCCAATCTAAAACCAAAAACCTACACATCCAATATAAAAAAAACAACT2640.2915323114978577No Hit
CCTAAAACAAACTAATACCACCCACTAAACAAAAACGAAACCCTAAAAAA2610.2882194443217456No Hit
AACAACAATATTTCCTAATCCTCCCAACTAAAAAAAAAACCCCCCCAACA2540.28048942091081763No Hit
CAAATCCCTAATCTCACCTAAAAAAAAAACTCTACTAACCCATCTCCAAA2500.2760722646760016No Hit
AACCCAATCTAAAACCAAAAACCTACAAAACCAACTCTTTAAATTTAACC2460.27165510844118557No Hit
CAAATCCCTAATCTCACCTAAAAAAAAAAAACTCTACTAACCCATCTCCG2430.26834224126507356No Hit
TCTCTTTACATTTAATCAAAAACCCAAAAAATTAAGCAAAACGTCTAAAA2280.25177790538451345No Hit
CCACCTAAACTCCTATAAAAAAATCACCCAACTACCGAAACCCATTCTAA2110.23300499138654537No Hit
ACCAAACAACCAAACTAAACAACGCTAAAAACTAAAAACCCAAATATCCT2000.22085781174080127No Hit
ATATAATACCCACCTTCCAAACCACGAACCCTCAACCCAATCCTAAAAAC1960.21644065550598524No Hit
CCCTAAAAACAAACTAAAACTATAAAAAAAAATTCCACTAACCCCGAACC1930.21312778832987322No Hit
AACTAATCTAAACCTCCTAACCTCAAACGATCTATCTACTTCTGCCTCCG1900.2098149211537612No Hit
AACCCAATCTAAAACCAAAAACCTACGCATCCAATATAAAAAAAACAACT1850.20429347586024119No Hit
ACTACAAACCCTACAACAAATCCATACCCCCCGCCACGACCCAAACACTA1600.17668624939264102No Hit
AACAACAATATTTCCTAATCCTCCCAACTAAAAAAAAAAAAACCCCCCCA1570.17337338221652898No Hit
CCAAACCAACCTAAATTAAAATCCCAACTCCTTAATAACCGTCCTAACCT1470.16233049162948893No Hit
CCTAAATAAAAACTTACCCAACCCCACTCTACCAATCCCCTTCCTCCCAT1450.1601219135120809No Hit
ACTACAAACCCTACAACAAATCCATACCCCCCTCCACGACCCGAACACTA1330.14687044480763284No Hit
CCAAAAAAACCAACAAAAAAACTAAATAAAACCTAAAACTTCTCCATCTT1250.1380361323380008No Hit
CCACCTAAACTCCTATAAAAAAATCACCCAACTACCTAAACCCATTCGAA1120.1236803745748487No Hit
CAAATTAACCTAAAAATCCCCACAACCTTAACTCTACCTATATTCCCACA1070.11815892928132869No Hit
CAAATCCCTAATCTCACCTAAAAAAAAAAAACTCTACTAACCCATCTCCA1060.11705464022262468No Hit
CTATAATACCCACCTTCCAAACCACGAACCCGCAACCCAATCCTAAAAAC1040.11484606210521665No Hit
ATATAATACCCACCTTCCAAACCACTAACCCTCAACCCAATCCTAAAAAC990.10932461681169663No Hit
CAAATCCCTAATCTCACCTAAAAAAAAAAAAACTCTACTAACCCATCTCC980.10822032775299262No Hit
TCTCAAACCTACTACCTAAAAACCTCATCCTCATAATACAACCTAAATCC970.10711603869428862No Hit
ACTACAAACCCTACAACAAATCCATTCCCCCCGCCACAACCCGAACACTA930.1026988824594726No Hit
ACCAAACAACCAAACTAAACAACGCTAAAAACAAAAAACCCAAATATCCT930.1026988824594726No Hit
CAAATCCCTAATCTCACCTAAAAAAAAACTCTACTAACCCATCTCCAAAT930.1026988824594726No Hit
AAAAACTAACACACACTTATACCCCCTAAACAACCATAAATACACAAAAA920.1015945934007686No Hit
CCCAAACAACCAAACTAAACAACGCTAAAAACGAAAAACCCAAATATCCT910.10049030434206457No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)