FastQCFastQC Report
Fri 2 Sep 2022
EGAF00000888071

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000888071
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences202894
Sequences flagged as poor quality0
Sequence length151
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCAAAACTCAACAACCTAAACCCCGAAAATAACTACTAAACTACCTACCG114055.621161788914408No Hit
AAAATTAACCTAAAAATCCCCACAACCTTAACTCTACCTATATTCCCACA78013.844864806253512No Hit
CCCAAAATCCTAAAATTCTCCTAACCACAAAAACTCCCCACAAAAACAAA71913.5442152059696195No Hit
ATATAATACCCACCTTCCAAACCACGAACCCGCAACCCAATCCTAAAAAC66173.2613088607844487No Hit
TAATACCAACTATACCACTCAACTCCAAAAAATTACCTTCCAAAAACTCT64463.177028399065522No Hit
ACAAACCAACCTAAATTAAAATCCCAACTCCTTAATAACCGTCCTAACCT64083.158299407572427No Hit
CCAACCACTCCCTAAAAATCCCCCCAAAAAAACCTATTACATCTACTCCG61233.017831971374215No Hit
AACTAATCTAAACCTCCTAACCTCAAACGATCTATCTACTTCTACCTCCG56452.7822409731189683No Hit
ACTAAATAAAAACTTACCCAACCCCGCTCTACCAATCCCCTTCCTCCCAT55012.7112679527240826No Hit
TCTCTTTACATTTAATCAAAAACCCAAAAAATTAAACAAAACGTCTAAAA52012.5634074935680697No Hit
ACACTCTAAAATTTCCCCTAAAAAACTAATTCAAACCATAACGAAAAATA48462.3884392835667887No Hit
CCAAAAAAACCAACAAAAAAACTAAATAAAACCGAAAACTTCTCCATCTT44012.169112935818703No Hit
AAATAATAACATTAAATACTCCTCCCAACTTAACCAAACTTAAATCCTCC43702.1538340217059155No Hit
ATATCTCCTTACATCCCAACCTCATCTATACAACAAAAAACCAAAAACTT42822.1104616203534854No Hit
CCCTTTAAACTATCCCACCTTTCTAAACGAAACCAATATACATCTTAAAT41242.032588445197985No Hit
TCTCAAACCTACTACCTAAAAACCTCATCCGCATAATACAACCTAAATCC40351.9887231756483679No Hit
TACCTTCCAAAAACTCTAAACATCCCCATACAACTACAAAACACCCAAAA28281.3938312616440112No Hit
AATCTAAAAACCTCCTCTCCAAAACTAAATCTTACACACCCCCAAAATTA28091.3844667658974636No Hit
ACTACAAACCCTACAACAAATCCATACCCCCCACCACAACCCAAACACTA27201.3406014963478465No Hit
TCCCTAATCTCAAAAAACATAAACTAACTCTAAAACCAAAAATTTCGATT26351.2987076995869766No Hit
CCACCTAAACTCCTATAAAAAAATCACCCAACTACCGAAACCCATTCGAA25601.2617425847979733No Hit
CCTAAAACAAACTAATACCACCCACTAAACGAAAACGAAACCCTAAAAAA24301.1976697191637014No Hit
CAAATCCCTAATCTCACCTAAAAAAAAAAACTCTACTAACCCATCTCCGA24261.1956982463749544No Hit
CCAACCACTCCCTAAAAATCCCCCCAAAAAAACCTATTACATCTACTCCA22521.1099391800644671No Hit
CAAATCCCTAATCTCACCTAAAAAAAAAACTCTACTAACCCATCTCCGAA17300.8526619811330054No Hit
AATCTAAAAACCTCCTCTCCAAAACTAAACCTTACACACCCCCAAAATTA17250.8501976401470719No Hit
AACAACAATATTTCCTAATCCTCCCAACTAAAAAAAAAAAACCCCCCCAA16500.8132325253580687No Hit
AACAACAATATTTCCTAATCCTCCCAACTAAAAAAAAAAACCCCCCCAAC16450.8107681843721352No Hit
AACCCAATCTAAAACCAAAAACCTACGCATCCAATATAAAAAAAACAACT14700.7245162498644613No Hit
CCCAAAATCCTAAAATTCTCCTAACCGCAAAAACTCCCCACAAAAACAAA13630.6717793527654834No Hit
ACTACAAACCCTACAACAAATCCATACCCCCCACCACAACCCGAACACTA13240.6525574930752018No Hit
ACTACAAACCCTACAACAAATCCATACCCCCCGCCACAACCCGAACACTA12240.603270673356531No Hit
AACCTTTATTTAATCAAAACTACTTAATTCAAAAAATATCCACATTACTC11680.5756700543140753No Hit
TACCTTCCAAAAACTCTAAACATCCCCATACAACTACGAAACACCCGAAA11010.5426478851025659No Hit
AAAAACTAACACACACTTATACCCCCGAAACAACCATAAATACACAAAAA10820.5332833893560185No Hit
CAAATCCCTAATCTCACCTAAAAAAAAAAAACTCTACTAACCCATCTCCG10170.5012469565388824No Hit
ACTACAAACCCTACAACAAATCCATACCCCCCGCCACGACCCGAACACTA10100.49779687915857546No Hit
TAATACCAACTATACCACTCAACTCCGAAAAATTACCTTCCAAAAACTCT10030.49434680177826845No Hit
CCTAAAACAAACTAATACCACCCACTAAACGAAAACGAAACCCCGAAAAA8920.4396384318905438No Hit
AACAACAATATTTCCTAATCCTCCCAACTAAAAAAAAAACCCCCCCAACA8420.4149950220312084No Hit
CCACCTAAACTCCTATAAAAAAATCACCCAACTACCGAAACCCATTCAAA8300.4090806036649679No Hit
TAAAACTCACTACTATCCCCCACAAACTAAAACTAAAAAACAAACTCTAA7490.36915827969284454No Hit
CTCCCAACCCCCACTCCTACCTAAATTCCACAACTTCTGTAGAACCATGT7040.34697921081944266No Hit
ACTAAATAAAAACTTACCCAACCCCTCTCTACCAATCCCCTTCCTCCCAT7020.3459934744250692No Hit
ATATAATACCCACCTTCCAAACCACTAACCCGCAACCCAATCCTAAAAAC6870.33860045146726864No Hit
AACAACAATATTTCCTAATCCTCCCAACTAAAAAAAAAAAAACCCCCCCA6590.3248001419460408No Hit
CAAATCCCTAATCTCACCTAAAAAAAAACTCTACTAACCCATCTCCGAAT5960.2937494455232782No Hit
TCTCTTTACATTTAATCAAAAACCCAAAAAATTAAACAAAACATCTAAAA5940.29276370912890476No Hit
CCAAACCAACCTAAATTAAAATCCCAACTCCTTAATAACCGTCCTAACCT5920.2917779727345313No Hit
CTATAATACCCACCTTCCAAACCACGAACCCGCAACCCAATCCTAAAAAC5760.283892081579544No Hit
ATATAATACCCACCTTCCAAACCACGAACCCTCAACCCAATCCTAAAAAC5180.2553057261427149No Hit
ACTACAAACCCTACAACAAATCCATACCCCCCACCACGACCCGAACACTA5080.25037704417084783No Hit
CAAATTAACCTAAAAATCCCCACAACCTTAACTCTACCTATATTCCCACA4930.24298402121304719No Hit
TACCTTCCAAAAACTCTAAACATCCCCATACAACTACGAAACACCCAAAA4440.21883347955089852No Hit
ACTACAAACCCTACAACAAATCCATACCCCCCGCCACGACCCAAACACTA4370.21538340217059157No Hit
CCTAAATAAAAACTTACCCAACCCCGCTCTACCAATCCCCTTCCTCCCAT4330.2134119293818447No Hit
CCACCTAAACTCCTATAAAAAAATCACCCAACTACCGAAACCCATTCTAA4320.21291906118465798No Hit
TCTCTTTACATTTAATCAAAAACCCAAAAAATTAAACAAAACTTCTAAAA4220.2079903792127909No Hit
TCTCAAACCTACTACCTAAAAACCTCATCCTCATAATACAACCTAAATCC4190.2065117746212308No Hit
CCACTCTAAAATTTCCCCTAAAAAACTAATTCAAACCATAACGAAAAATA4100.2020759608465504No Hit
CAATACCAACTATACCACTCAACTCCAAAAAATTACCTTCCAAAAACTCT3880.19123286050844285No Hit
ACTACAAACCCTACAACAAATCCATACCCCCCACCACAACCCAGACACTA3800.18728991493094915No Hit
AACCCAATCTAAAACCAAAAACCTACTCATCCAATATAAAAAAAACAACT3520.17348960540972133No Hit
CCAAAAAAACCAACAAAAAAACTAAATAAAACCAAAAACTTCTCCATCTT3220.15870355949412007No Hit
CAAATCCCTAATCTCACCTAAAAAAAAAAAAACTCTACTAACCCATCTCC3150.15525348211381312No Hit
CTATCTCCTTACATCCCAACCTCATCTATACAACAAAAAACCAAAAACTT3000.1478604591560125No Hit
CACTAATCTAAACCTCCTAACCTCAAACGATCTATCTACTTCTACCTCCG2970.14638185456445238No Hit
CCTCTTTACATTTAATCAAAAACCCAAAAAATTAAACAAAACGTCTAAAA2930.14441038177570553No Hit
CCCAAAATCCTAAAATTCTCCTAACCTCAAAAACTCCCCACAAAAACAAA2910.14342464538133212No Hit
CCAAAAAAACCAACAAAAAAACTAACAACAACATCAAAAAACAAAAATCC2900.1429317771841454No Hit
AACTAATCTAAACCTCCTAACCTCAAACTATCTATCTACTTCTACCTCCG2790.1375102270150916No Hit
CAATAATAACATTAAATACTCCTCCCAACTTAACCAAACTTAAATCCTCC2750.1355387542263448No Hit
CCAAAACTCAACAACCTAAACCCGAAAATAACTACTAAACTACCTACCGC2740.13504588602915807No Hit
CCAAAAAAACCAACAAAAAAACTAAATAAAACCTAAAACTTCTCCATCTT2730.13455301783197138No Hit
CCTACAAACCCTACAACAAATCCATACCCCCCACCACAACCCAAACACTA2660.13110294045166443No Hit
CAAAACTAACTCTAAAATTTCCTTTTTCAATCTTAACCTAATAACCAACT2620.12913146766291758No Hit
AAAAACTAACACACACTTATACCCCCGAAACAACCATAAATACACGAAAA2560.12617425847979732No Hit
CCAACCACTCCCTAAAAATCCCCCCGAAAAAACCTATTACATCTACTCCA2450.12075270831074353No Hit
AAAATTTAATCCTCAATCCAATCCTAAACTGTAGAACCATGTCGTCAGTG2380.11730263093043658No Hit
AACAACAATATTTCCTAATCCTCCCAACTAAAAAAAAACCCCCCCAACAA2380.11730263093043658No Hit
ATATAATACCCACCTTCCAAACCACTAACCCTCAACCCAATCCTAAAAAC2360.11631689453606316No Hit
AAAAACTAACACACACTTATACCCCCTAAACAACCATAAATACACAAAAA2350.11582402633887647No Hit
CCAACCACTCCCTAAAAATCCCCCCAAAAAACCTATTACATCTACTCCGA2290.1128668171557562No Hit
AAATAATAACATTAAATACTCCTCCCAACAACACTAACTCAAATAATCAC2270.11188108076138278No Hit
AACAACAATATTTCCTAATCCTCCCAACTAAAAAAAAAAAAAACCCCCCC2210.10892387157826254No Hit
CCACCTAAACTCCTATAAAAAAATCACCCAACTACCTAAACCCATTCGAA2180.10744526698670241No Hit
CCTAAAACAAACTAATACCACCCACTAAACGAAAACTAAACCCTAAAAAA2110.10399518960639545No Hit
CCTAAAACAAACTAATACCACCCACTAAACTAAAACGAAACCCTAAAAAA2090.10300945321202204No Hit
CCTCAAACCTACTACCTAAAAACCTCATCCGCATAATACAACCTAAATCC2090.10300945321202204No Hit
CAAATCCCTAATCTCACCTAAAAAAAAAACTCTACTAACCCATCTCCTAA2080.10251658501483533No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)