FastQCFastQC Report
Fri 2 Sep 2022
EGAF00000888078

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000888078
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences145810
Sequences flagged as poor quality0
Sequence length151
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGAGGTAAGAGAGTGTGGATAGTATAGAAATAGTGTGGGGTTGTGGTGG74325.097044098484329No Hit
GGTAGTTGGGTGATTTTTTTATAGGAGTTTAGGTGGTCGTTGACGGTTTT64054.3927028324531925No Hit
TGGGTTTTAGATATTTGTTTTTTTTGGTCGGTTTGTTTTTAATTTTTTAG63774.373499759961594No Hit
GTAAGGTTTGGGGTTATTTTAGTGGAGTCGGAGGTGTTACGTTTTGTTGT62834.309032302311227No Hit
TTGGTGGGGAGGTTTTGATAGGTTTTGGGTTTGGGTTTAGGACGGTGAGG61484.216446059941019No Hit
GGGTGTTTAGGTATTAGGGAGTTGTATGGGGTAGTGTTCGGGTTGTGGTG58824.034016871270832No Hit
AATGGTTGTTAGAGTTGTAGGGTTTTTTTTAGGGTTTCGTTTTCGTTTAG54113.71099375900144No Hit
GAAGTTGTGGAATTTAGGTAGGAAGTGGTTGATTTTTAGTGTTTAGTTGT52753.6177216926136757No Hit
GGTTAGGAGAATTTTAGGATTTTGGGTTTTTTTTATAGTAGATTGGAGGA50293.44900898429463No Hit
TTGTGGGGATTTAGGTTGTATTATGCGGATGAGGTTTTTAGGTAGTAGGT48063.2960702283793974No Hit
GGTTTGGAAGGTGGGTATTATATTTTGTTTTGTTTTCGAAGTTTAGTTTT46093.1609628969206502No Hit
TAGAAAGGTGGGATAGTTTAAAGGGGGATTTTTAGGTTATAGGTAAATTT40532.7796447431589053No Hit
GTTTAGGATTGGATTGAGGATTAAATTTTTTAAGGTATTTTTTTAAAGAG38922.6692270763322132No Hit
GATATTTGAAAGGAGGATTGAATGATATGAGGGAGTGGGTCGGAAGGGAG38882.6664837802619847No Hit
GGTAGGAGGGGTTGTATAAGGTTTATTTGGAAGTTAGAATTTATTTGTGG32002.1946368561827034No Hit
GGGGATTGGGATAAAGGAGTATTATTTTCGGTTTTTGTTTGAGTGATTTC29732.038954804197243No Hit
GAGAGTAGTAGGAGGAGGAGGAGGAGGGGGTAAGTGAGAGGGGGTGTGGT28261.9381386736163502No Hit
GGAGGAGGGTTTAGTAGGTGGTGAGGGGAAGGAGGGGGCTTTAGGGGGTG26581.822920238666758No Hit
TGGGGAGGGAAGAGTAGATTTTATGATATTTTTGGGGTTTTTAGATAGTT26101.7900006858240176No Hit
AAAATATTAGAGGAAGGAGGGGTTTGGGTTTCGTTGGTTTTGTTTAAAAA25281.733763116384336No Hit
GTTGGGATTTTAGTTTATTTTTGTAATTTAAATATTTTTTAGTAAAGTTT22481.5417323914683492No Hit
GGATTTTTTTGATTTTTTTGTTTTGAATTTTTTATGAATTTTTTTTTTAT19251.3202112337974077No Hit
GGTTGGAGTTTTAGGTGTATTTGGTAGTTTAATAGATAGTTTGTGTGTAG17481.1988203826898018No Hit
GTTGTGGTTATTGGTTTTGTGTTGTTTTTTTTTTCGGGCGTAGGGGATAA15741.0794870036348672No Hit
GGTAGTTGGGTGATTTTTTTATAGGAGTTTAGGTGGTCGTTGATGGTTTT12690.8703106782799533No Hit
ATTATTTTTTTAGGGAGTTGGGTTGTATTTTATTTGTTGTTTTGTTTTTA11800.809272340717372No Hit
TGGGGAGGGAAGAGTAGATTTTACGATATTTTTGGGGTTTTTAGATAGTT9340.6405596323983266No Hit
AAAATATTAGAGGAAGGAGGGGTTTGGGTTTTGTTGGTTTTGTTTAAAAA9150.6275289760647418No Hit
TTGGTGGGGAGGTTTTGATAGGTTTTGGTTTTGGGTTTAGGACGGTGAGG9140.6268431520471847No Hit
GAGAGTAGTAGGAGGAGGAGGAGGGGGTAAGTGAGAGGGGGTGTGGTAGG8450.5795212948357452No Hit
GTTGTGGTTATTGGTTTTGTGTTGTTTTTTTTTCGGGCGTAGGGGATAAG7830.5370002057472053No Hit
GGATTTTTTTGATTTTTTTGTTTTGAATTTTTTATGAATTTTTTTTTATT6980.4787051642548522No Hit
GGTTGGAGTTTTAGGTGTATTTGGGCGTAGGTTTTTTTGAGGAAATTAAG6000.41149441053425695No Hit
AATGGTTGTTAGAGTTGTAGGGTTTTTTTAGGGTTTCGTTTTCGTTTAGT5670.3888622179548728No Hit
GGAAGGTATGTGGGGTTTAGTTTTAGGTTTTAGATTCGGTAGTTTTAGAT5530.37926068170907346No Hit
GGTAGGAGGGGTTGTATAAGGTTTTGGAGAGGAGGTTTTTAGATTAGACC4710.3230231122693917No Hit
TGGGTTTTAGATATTTGTTTTTTTGGTCGGTTTGTTTTTAATTTTTTAGG4250.2914752074617653No Hit
GGTTAGGAGAATTTTAGGATTTTGGGTTTTTTTATAGTAGATTGGAGGAG4030.27638707907550925No Hit
GTTGTGGTTATTGGTTTTGTGTTGTTTTTTTTTTGGGTGTAGGGGATAAG3720.2551265345312393No Hit
GTTGTGGTTATTGGTTTTGTGTTGTTTTTTTTTTTGGGTGTAGGGGATAA3620.24826829435566833No Hit
GTTGTGGTTATTGGTTTTGTGTTGTTTTTTTTTTTCGGGCGTAGGGGATA3520.2414100541800974No Hit
GGGAGATTAAGTAGGTGAGTGGTTTTTTTGTTGGTTTTTTTGTTGGTTTT3370.23112269391674095No Hit
GGATTTTTTTGATTTTTTTGTTTTGAATTTTTTATGAATTTTTTTTTTTA2600.17831424456484468No Hit
GGAGGAGGGTTTAGTAGGTGGCGAGGGGAAGGAGGGGGTTTTAGGGGGCG2570.17625677251217337No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2220.15225293189767505No Hit
GTAAGGTTTGGGGTTATTTTAGTGGGGTCGGAGGTGTTACGTTTTGTTGT1990.13647897949386187No Hit
GGTTAGGAGAATTTTAGGATTTTGGGTTTTTTTTCTAGTAGATTGGAGGA1970.13510733145874768No Hit
GGAAGGTATGTGGGGTTTAGTTTTATGTGTGGTTTGGAAGGTGGGTATTA1920.1316782113709622No Hit
GGATTTTTTTGATTTTTTTGTTTTGAATTTTTTATGAATTTTTTTTTTTT1770.12139085110760578No Hit
GGGTGTTTAGGTATTAGGGAGTTGTATGGGGTAGTGTTCGCGTTGTGGTG1550.10630272272134969No Hit
GGTTAGGAGAATTTTAGGATTTTGGTTTTTTTTATAGTAGATTGGAGGAG1490.10218777861600713No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)