FastQCFastQC Report
Sat 3 Sep 2022
EGAF00000888095

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000888095
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences219803
Sequences flagged as poor quality0
Sequence length301
%GC34

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCATTCAAAAAACCCAAAAAACCAAACCCAACTCATTCCACACCAACAT138056.280624013321019No Hit
TAATCTAAACCTCCTAACCTCAAACGATCTATCTACTTCTACCTCCGCCT136076.190543350181754No Hit
CAAAACAAACAACACTAAAACCAAACTAATAAAAAACAAATCCCGCATCA109744.992652511567177No Hit
AAACCTATCAAAACCTCCCCACCAAAAACCTACCGCTCTAACCACCCTCG94774.3115881038930315No Hit
ATAATACTCCTTTATCCCAATCCCCAAAACCCTTCACCAAAAATACTAAA94524.3002142827895895No Hit
AAAAAAAATCCCAAAACAAACATACGAAATCAAAAAAATACCTAAAATAA91084.143710504406219No Hit
TACTATCCACACTCTCTTACCTCCCAACCCCCACACTCCCTTCTAACACC89974.093210738706933No Hit
TAAAACTAAACCCCACATACCTTCCTCCAAATATAAAACCACCAAACGCT89494.071373002188324No Hit
AAAAATCCTAAAAACCCCAAAACTACGAACTAACGAAAAAAATAATCACA84993.8666442223263555No Hit
ATACAAAACAAACCCCTATCTCCTCTACCGCGACCTTAAAAAACAATACC82293.7438069544091754No Hit
AACCCCAAATACAAAAAAATACACCACTAAAACCGAAAAATAAACCCCTA81203.6942170943981654No Hit
ACTCTAAAAAACCAACTCCTCCAAACAAAAACTCCTAAAACCTCAACAAA77303.5167854851844607No Hit
ACCCCCAAAAAAACCTACTCATAAACGCTTAAAACCCCCACCACCCGCAA71253.241539014481149No Hit
ACTCCCTTTTCCCTTTAACTTTATTATATATCCCTCTAAAAATTTCTAAA70613.2124220324563355No Hit
TACCACCTAAATCTCCAACTTCTCCGAAAAAACCAACTATCCTAATAAAA69053.141449388770854No Hit
ACTCCCTTTTCCCTTTAACTTTATTATATCCCTCTAAAAATTTCTAAAAT44422.020900533659686No Hit
TCTTTCCTCTTACCCAACACTTTATAAATAAATAATCACCAAAACCGCAC39761.8088925082915157No Hit
AACCACTCACCTACTTAATCTCCCGATTCCAATATATCCAAAACTTACCC27261.2402014531193841No Hit
AAAACCCCACTCTATCTTACAACCTAAATTCAAAACCCAAACACCTCCAT26031.1842422532904464No Hit
AAACTACAAAATCAAAACCAACCCCATACAACTCCCTAATACCTTGTAGA13400.6096368111445248No Hit
AAAAAAAATCCCAAAACAAACATACGAAATCAAAAAAATATCTAAAATAA7490.34075968025914116No Hit
ATAATACTCCTTTATCCCAATCCCCAAAACCCTCCACCAAAAATACTAAA6430.2925346787805444No Hit
CCCCCCAAAAAAACCTACTCATAAACGCTTAAAACCCCCACCACCCGCAA6000.2729717064826231No Hit
CCTCTAAAAAACCAACTCCTCCAAACAAAAACTCCTAAAACCTCAACAAA5890.2679672251971083No Hit
CCTCCCTTTTCCCTTTAACTTTATTATATATCCCTCTAAAAATTTCTAAA5730.260687979690905No Hit
AAACCTATCAAAACCTCCCCACCAAAACCTACCGCTCTAACCACCCTCGC5110.23248090335436733No Hit
ACTCCCACACACACTAACACAATAAAACAACGCTACGAACATCAATACAC4730.2151926952771345No Hit
CAATCTAAACCTCCTAACCTCAAACGATCTATCTACTTCTACCTCCGCCT4500.2047287798619673No Hit
CCTCCCTTTTCCCTTTAACTTTATTATATCCCTCTAAAAATTTCTAAAAT3900.177431609213705No Hit
CTAATACTCCTTTATCCCAATCCCCAAAACCCTTCACCAAAAATACTAAA3870.1760667506812919No Hit
AAAAAAAATCCCAAAACAAACATACGAAATCAAAAAATACCTAAAATAAA3850.17515684499301648No Hit
CACTATCCACACTCTCTTACCTCCCAACCCCCACACTCCCTTCTAACACC3620.16469292957784926No Hit
CTACAAAACAAACCCCTATCTCCTCTACCGCGACCTTAAAAAACAATACC3580.16287311820129843No Hit
CAAAACTAAACCCCACATACCTTCCTCCAAATATAAAACCACCAAACGCT3500.1592334954481968No Hit
CAACCTATCAAAACCTCCCCACCAAAAACCTACCGCTCTAACCACCCTCG3490.15877854260405908No Hit
CTCATTCAAAAAACCCAAAAAACCAACCCCAACTCATTCCACACCAACAT3460.157413684071646No Hit
TAATCTAAACCTCCTAACCTCAAACGCTCTATCTACTTCTACCTCCGCCT3430.15604882553923285No Hit
TACCACCTAAATCTCCAACTTCTCCTAAAAAACCAACTATCCTAATAAAA3280.14922453287716728No Hit
CACCCCAAATACAAAAAAATACACCACTAAAACCGAAAAATAAACCCCTA3190.14512995727992795No Hit
AAAAATCCTAAAAACCCCAAAACTACAAACTAACGAAAAAAATAATCACA3000.13648585324131154No Hit
TACTATCCACACTCTCTTACCTCCCACCCCCCACACTCCCTTCTAACACC2780.12647689067028203No Hit
AAAACCCCACTCTATCTTACAACCTAAATACAAAACCCAAACACCTCCAT2760.1255669849820066No Hit
ATAATACTCCTTTATCCCAATCCCCACAACCCTTCACCAAAAATACTAAA2700.12283726791718037No Hit
CAAAATCCTAAAAACCCCAAAACTACGAACTAACGAAAAAAATAATCACA2690.12238231507304267No Hit
ACCCCCAAAAAAACCTACTCATAAACACTTAAAACCCCCACCACCCGCAA2610.11874269231994104No Hit
AAAAAAATCCCAAAACAAACATACGAAATCAAAAAAATACCTAAAATAAA2470.11237335250201316No Hit
AAACCTATCAAAACCTCCCCACCAAACACCTACCGCTCTAACCACCCTCG2430.11055354112546234No Hit
TAATCTAAACCTCCTAACCTCAAACTATCTATCTACTTCTACCTCCGCCT2350.10691391837236071No Hit
AAAAAAAATCCCAAAACAAACATACGCAATCAAAAAAATACCTAAAATAA2340.10645896552822301No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)