FastQCFastQC Report
Fri 2 Sep 2022
EGAF00000888155

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000888155
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences125011
Sequences flagged as poor quality0
Sequence length151
%GC30

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAATTACAAAAATAAACTAAAATCCCAACACATCAAAAATACAATAATAC1362310.897441025189783No Hit
CACACACACAAAACTATAATAAATACCCTAAAAAACACTCCGTAAAATTC124309.94312500499956No Hit
CCAAAAAAACCAACAAAAAAACTAAATAAAACCAAAAACTTCTCCATCTT108748.698434537760678No Hit
CTATTAACCCCCTCCCTAAACAATCACCGTTTATATTATTTATTTCCTAA80076.4050363568006015No Hit
ACCAAACAACCAAACTAAACAACGCTAAAAACGAAAAACCCAAATATCCT78616.288246634296183No Hit
TCTCTTTACATTTAATCAAAAACCCAAAAAATTAAACAAAACATCTAAAA54164.332418747150251No Hit
ACCAAACAACCAAACTAAACAACGCTAAAAACAAAAAACCCAAATATCCT49023.921254929566198No Hit
TCTCTTTACATTTAATCAAAAACCCAAAAAATTAAACAAAACGTCTAAAA40543.2429146235131308No Hit
ACCCCACTCCAACTATCCAAAAAAAAAAACTCTAAAAATAAAAAAAAAAT35092.8069529881370436No Hit
AAAAACTAACACACACTTATACCCCCGAAACAACCATAAATACACAAAAA34192.734959323579525No Hit
CCAAAAAAACCAACAAAAAAACTAAATAAAACCGAAAACTTCTCCATCTT29562.3645919159114No Hit
CTATTAACCCCCTCCCTAAACAATCACCATTTATATTATTTATTTCCTAA24301.9438289430530113No Hit
ACTCAAACTAATACACCACTACATACCGCCCCCTAAAACCCCCTCCTTCC21051.6838518210397484No Hit
ACCCCACTCCAACTATCCAAAAAAAAAACTCTAAAAATAAAAAAAAAATA20561.6446552703362105No Hit
ACTCAAACTAATACACCACTACATACCACCCCCTAAAACCCCCTCCTTCC16991.3590804009247186No Hit
ACCCCACTCCAACTATCCAAAAAAAAAAACTCTAAAAATAAAAAAAAATA12100.9679148234955325No Hit
ACCCCACTCCAACTATCCAAAAAAAAAAAACTCTAAAAATAAAAAAAAAA9290.7431346041548343No Hit
ACCCCACTCCAACTATCCAAAAAAAAAACTCTAAAAATAAAAAAAAATAA7560.6047467822831591No Hit
ACCAAACAACCAAACTAAACAACACTAAAAACGAAAAACCCAAATATCCT6940.5551511466990905No Hit
ACCCCACTCCAACTATCCAAAAAAAAAAACTCTAAAAATAAAAAAAAAAA6690.5351529065442241No Hit
CCCAAACAACCAAACTAAACAACGCTAAAAACGAAAAACCCAAATATCCT5810.4647591011990945No Hit
ACCCCACTCCAACTATCCAAAAAAAAACTCTAAAAATAAAAAAAAAATAA4540.36316804121237334No Hit
CAATTACAAAAATAAACTAAAATCCCAACACATCAAAAATACAATAATAC4040.3231715609026406No Hit
CACACACACAAAACTATAATAAATACCCTAAAAAACACTCCATAAAATTC3820.30557310956635814No Hit
ACCCCACTCCAACTATCCAAAAAAAAAACTCTAAAAATAAAAAAAAAAAT3770.3015734615353849No Hit
CCCAAACAACCAAACTAAACAACGCTAAAAACAAAAAACCCAAATATCCT3580.2863747990176864No Hit
ACTCAAACTAATACACCACTACATACCGCCCCCTAAAGCCCCCTCCTTCC3260.2607770516194575No Hit
ACCCCACTCCAACTATCCAAAAAAAAAAAACTCTAAAAATAAAAAAAAAT3010.24077881146459112No Hit
CCTCTTTACATTTAATCAAAAACCCAAAAAATTAAACAAAACATCTAAAA2870.22957979697786593No Hit
ACTCAAACTAATACACCACTACATACCGCCCCCTGAAACCCCCTCCTTCC2660.2127812752477782No Hit
CCCCCACTCCAACTATCCAAAAAAAAAAACTCTAAAAATAAAAAAAAAAT2550.203982049579637No Hit
TCTCTTTACATTTAATCAAAAACCCAAAAAGTTGAACAAAGCATCTAAAA2160.17278479493804544No Hit
ACCCCACTCCAACTATCCAAAAAAAAAAAAACTCTAAAAATAAAAAAAAA2040.16318563966370958No Hit
CCTCTTTACATTTAATCAAAAACCCAAAAAATTAAACAAAACGTCTAAAA1970.157586132420347No Hit
ACCCCACTCCAACTATCCAAAAAAAAACTCTAAAAATAAAAAAAAATAAA1800.14398732911503787No Hit
CCAAAAAACCAACAAAAAAACTAAATAAAACCAAAAACTTCTCCATCTTA1570.12558894817256083No Hit
CCCCCACTCCAACTATCCAAAAAAAAAACTCTAAAAATAAAAAAAAAATA1520.12158930014158754No Hit
CCTCAAACTAATACACCACTACATACCGCCCCCTAAAACCCCCTCCTTCC1480.11838958171680891No Hit
CCAAAAAAACCAACAAAAAACTAAATAAAACCAAAAACTTCTCCATCTTA1430.11438993368583564No Hit
CACACACACAAAACTATAATAAATACCCTAAAAACACTCCGTAAAATTCA1300.10399084880530512No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)