FastQCFastQC Report
Fri 2 Sep 2022
EGAF00000888157

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000888157
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences111025
Sequences flagged as poor quality0
Sequence length151
%GC30

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCAAAAAAACCAACAAAAAAACTAAATAAAACCGAAAACTTCTCCATCTT1386412.487277640171133No Hit
CACACACACAAAACTATAATAAATACCCTAAAAAACACTCCGTAAAATTC1259511.344291826165279No Hit
AAATTACAAAAATAAACTAAAATCCCAACACATCAAAAATACAATAATAC1144310.306687682954289No Hit
ACCAAACAACCAAACTAAACAACGCTAAAAACGAAAAACCCAAATATCCT103819.350146363431659No Hit
TCTCTTTACATTTAATCAAAAACCCAAAAAATTAAACAAAACGTCTAAAA60345.434811979283944No Hit
CTATTAACCCCCTCCCTAAACAATCACCGTTTATATTATTTATTTCCTAA51444.633190722810178No Hit
AAAAACTAACACACACTTATACCCCCGAAACAACCATAAATACACAAAAA31202.810177887863094No Hit
CTATTAACCCCCTCCCTAAACAATCACCATTTATATTATTTATTTCCTAA30962.7885611348795316No Hit
ACCCCACTCCAACTATCCAAAAAAAAAAACTCTAAAAATAAAAAAAAAAT27002.4318847106507544No Hit
TCTCTTTACATTTAATCAAAAACCCAAAAAATTAAACAAAACATCTAAAA24552.211213690610223No Hit
ACTCAAACTAATACACCACTACATACCGCCCCCTAAAACCCCCTCCTTCC17981.6194550776852061No Hit
ACCCCACTCCAACTATCCAAAAAAAAAACTCTAAAAATAAAAAAAAAATA15001.3510470614726413No Hit
ACCAAACAACCAAACTAAACAACACTAAAAACGAAAAACCCAAATATCCT14781.3312317045710427No Hit
ACTCAAACTAATACACCACTACATACCACCCCCTAAAACCCCCTCCTTCC11471.0331006530060798No Hit
ACTCAAACTAATACACCACTACATACCGCCCCCTGAAACCCCCTCCTTCC10620.95654131952263No Hit
ACCCCACTCCAACTATCCAAAAAAAAAAACTCTAAAAATAAAAAAAAATA10160.9151092096374691No Hit
ACCCCACTCCAACTATCCAAAAAAAAAAAACTCTAAAAATAAAAAAAAAA8160.7349696014411169No Hit
CCCAAACAACCAAACTAAACAACGCTAAAAACGAAAAACCCAAATATCCT7470.6728214366133753No Hit
ACCCCACTCCAACTATCCAAAAAAAAAACTCTAAAAATAAAAAAAAATAA5940.535014636343166No Hit
ACCCCACTCCAACTATCCAAAAAAAAAAACTCTAAAAATAAAAAAAAAAA5910.5323125422202207No Hit
CAATTACAAAAATAAACTAAAATCCCAACACATCAAAAATACAATAATAC3700.3332582751632515No Hit
CCTCTTTACATTTAATCAAAAACCCAAAAAATTAAACAAAACGTCTAAAA3540.31884710650754333No Hit
ACCCCACTCCAACTATCCAAAAAAAAACTCTAAAAATAAAAAAAAAATAA3430.30893942805674396No Hit
ACCAAACAACCAAACTAAACAACGCTAAAAACGAAAAACCCAAGTATCCT3370.30353523981085345No Hit
ACCCCACTCCAACTATCCAAAAAAAAAAAACTCTAAAAATAAAAAAAAAT2440.21977032199954968No Hit
ACCCCACTCCAACTATCCAAAAAAAAAACTCTAAAAATAAAAAAAAAAAT2400.2161675298356226No Hit
CCCCCACTCCAACTATCCAAAAAAAAAAACTCTAAAAATAAAAAAAAAAT2200.1981535690159874No Hit
CCAAAAAAACCAACAAAAAACTAAATAAAACCGAAAACTTCTCCATCTTA1930.17383472190947985No Hit
ACCCCACTCCAACTATCCAAAAAAAAAAAAACTCTAAAAATAAAAAAAAA1880.16933123170457104No Hit
CCAAAAAACCAACAAAAAAACTAAATAAAACCGAAAACTTCTCCATCTTA1850.16662913758162576No Hit
CACACACACAAAACTATAATAAATACCCTAAAAACACTCCGTAAAATTCA1690.15221796892591757No Hit
TCTCTTTACATTTAATCAAAAACCCAAAAAATTAAACAAAACTTCTAAAA1440.12970051790137357No Hit
CCTCAAACTAATACACCACTACATACCGCCCCCTAAAACCCCCTCCTTCC1430.1287998198603918No Hit
ACCCCACTCCAACTATCCAAAAAAAAACTCTAAAAATAAAAAAAAATAAA1400.12609772573744651No Hit
ACCAAACAACCAAACTAAACAACGCTAAAAACGAGAAACCCAAATATCCT1350.12159423553253772No Hit
CCCCCACTCCAACTATCCAAAAAAAAAACTCTAAAAATAAAAAAAAAATA1290.11619004728664714No Hit
CTCTTTACATTTAATCAAAAACCCAAAAAATTAAACAAAACGTCTAAAAA1230.11078585904075659No Hit
CCTCTTTACATTTAATCAAAAACCCAAAAAATTAAACAAAACATCTAAAA1230.11078585904075659No Hit
CCCAAACAACCAAACTAAACAACACTAAAAACGAAAAACCCAAATATCCT1210.10898446295879306No Hit
CAAAACTAACACACACTTATACCCCCGAAACAACCATAAATACACAAAAA1150.1035802747129025No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)