FastQCFastQC Report
Thu 1 Sep 2022
EGAF00000888160

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000888160
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43392
Sequences flagged as poor quality0
Sequence length151
%GC30

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAGATAATAAATTGGGTATTGTTGAAATGTAATTAATTAAATAGTTTTT1112525.638366519174046No Hit
GTGTTTGGAGTGTTGTTTTTTTAGGGATGGTGTTTGTAGTGATAGGGTTG880820.298672566371682No Hit
GTTTTATTGGGTTAATGAGAAGGGAGGTTGGTAGGGTTGAGCGTTAGGTT33907.8125No Hit
GTTTTATTGGGTTAATGAGAAGGGAGGTTGGTAGGGTTGAGTGTTAGGTT33677.759494837758112No Hit
ATTATTTTTTTAGGGAGTTGGGTTGTATTTTATTTGTTGTTTTGTTTTTA20344.6875No Hit
GTTTTATTGGGTTAATGAGAAGGGAGGTCGGTAGGGTTGAGCGTTAGGTT13783.1757005899705018No Hit
GTTTTATTGGGTTAATGAGAAGGGAGGTCGGTAGGGTTGAGTGTTAGGTT13403.088126843657817No Hit
AAAGATAATAAATTGGGTATTGTTGAAACGTAATTAATTAAATAGTTTTT7431.712297197640118No Hit
GGAATTGTTTTTGGGAATTTGTAGCGTTGGTTTCGTTAAGTCGGTTGGAA2980.6867625368731564No Hit
GTGTTTGGAGTGTTGTTTTTTTAGGGATGGTGTTTTTAGTGATAGGGTTG2930.6752396755162242No Hit
GTAAGGTTTGGGGTTATTTTAGTGGAGTCGGAGGTGTTATGTTTTGTTGT1880.433259587020649No Hit
GTGTTTGGAGTGTTGTTTTTTAGGGATGGTGTTTGTAGTGATAGGGTTGG1220.28115781710914456No Hit
GTTTTATTGGGTTAATGAGAAGGGCGGTTGGTAGGGTTGAGCGTTAGGTT880.2028023598820059No Hit
GTTTTATTGGGTTAATGAGAAGGGCGGTTGGTAGGGTTGAGTGTTAGGTT820.1889749262536873No Hit
TGGGGAGGGAAGAGTAGATTTTACGATATTTTTGGGGTTTTTAGATAGTT730.16823377581120944No Hit
TAGATGTAATAGGTTTTTTTGGGGGGATTTTTAGGGAGTGGTTGGGTAGA700.16132005899705015No Hit
ATTATTTTTTTAGGGAGATGGGTTGTATTTTATTTGTTGTTTTGTTTTTA680.1567109144542773No Hit
ATTATTTTTTAGGGAGTTGGGTTGTATTTTATTTGTTGTTTTGTTTTTAT490.11292404129793511No Hit
ATTATTTTTTTAGGGAGTTGGGTTGTATTTTATTTGTTGTTTTGGTTTTA470.10831489675516225No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)