FastQCFastQC Report
Thu 1 Sep 2022
EGAF00000888162

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000888162
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences69740
Sequences flagged as poor quality0
Sequence length151
%GC31

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAGATAATAAATTGGGTATTGTTGAAATGTAATTAATTAAATAGTTTTT1378819.770576426727846No Hit
GTGTTTGGAGTGTTGTTTTTTTAGGGATGGTGTTTGTAGTGATAGGGTTG1193117.107829079437913No Hit
GTAAGGTTTGGGGTTATTTTAGTGGAGTCGGAGGTGTTACGTTTTGTTGT1067315.303986234585604No Hit
GTTTTATTGGGTTAATGAGAAGGGAGGTTGGTAGGGTTGAGTGTTAGGTT63429.093776885574993No Hit
GGAATTGTTTTTGGGAATTTGTAGCGTTGGTTTCGTTAAGTCGGTTGGAA57618.260682535130485No Hit
GTTTTATTGGGTTAATGAGAAGGGAGGTCGGTAGGGTTGAGTGTTAGGTT42616.109836535704043No Hit
TGGGGAGGGAAGAGTAGATTTTACGATATTTTTGGGGTTTTTAGATAGTT8811.2632635503297964No Hit
GGGAGATTAAGTAGGTGAGTGGTTCGTTTCGAGTTTGGTTTTTTTTTATT7981.1442500716948667No Hit
ATTATTTTTTTAGGGAGTTGGGTTGTATTTTATTTGTTGTTTTGTTTTTA5040.7226842558072842No Hit
GTTTTATTGGGTTAATGAGAAGGGCGGTTGGTAGGGTTGAGTGTTAGGTT1700.24376254660166333No Hit
GTGTTTGGAGTGTTGTTTTTTAGGGATGGTGTTTGTAGTGATAGGGTTGG1660.23802695726985948No Hit
GTTTTATTGGGTTAATGAGAAGGGAGGTCAGTAGGGTTGAGTGTTAGGTT1330.1907083452824778No Hit
GTTTTATTGGGTTAATGAGAAGGGCGGTCGGTAGGGTTGAGTGTTAGGTT1140.16346429595640952No Hit
TAGATGTAATAGGTTTTTTTGGGGGGATTTTTAGGGAGTGGTTGGGTAGG960.13765414396329223No Hit
GTAAGGTTTGGGGTTATTTAGTGGAGTCGGAGGTGTTACGTTTTGTTGTT740.10610840263837108No Hit
GTTTTATTGGGTTAATGAGTAGGGAGGTTGGTAGGGTTGAGTGTTAGGTT710.10180671063951821No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)