FastQCFastQC Report
Thu 1 Sep 2022
EGAF00000888165

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000888165
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences91229
Sequences flagged as poor quality0
Sequence length151
%GC31

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCAAACAACCAAACTAAACAACGCTAAAAACGAAAAACCCAAATATCCT1606717.61172434204036No Hit
CTATTAACCCCCTCCCTAAACAATCACCGTTTATATTATTTATTTCCTAA1249513.696302710760833No Hit
TCTCTTTACATTTAATCAAAAACCCAAAAAATTAAACAAAACATCTAAAA1194713.095616525446951No Hit
AAATTACAAAAATAAACTAAAATCCCAACACATCAAAAATACAATAATAC1148012.583717896721438No Hit
ACTCAAACTAATACACCACTACATACCACCCCCTAAAACCCCCTCCTTCC32833.5986363985136305No Hit
ACCCCACTCCAACTATCCAAAAAAAAAAACTCTAAAAATAAAAAAAAAAT30263.3169277313135077No Hit
ACCCCACTCCAACTATCCAAAAAAAAAACTCTAAAAATAAAAAAAAAATA16741.8349428361595546No Hit
ACCCCACTCCAACTATCCAAAAAAAAAAACTCTAAAAATAAAAAAAAATA12111.3274287781297613No Hit
CCCAAACAACCAAACTAAACAACGCTAAAAACGAAAAACCCAAATATCCT11401.2496026482807001No Hit
ACCCCACTCCAACTATCCAAAAAAAAAAAACTCTAAAAATAAAAAAAAAA9471.0380471122121255No Hit
ACCCCACTCCAACTATCCAAAAAAAAAACTCTAAAAATAAAAAAAAATAA6420.7037235966633417No Hit
ACCCCACTCCAACTATCCAAAAAAAAAAACTCTAAAAATAAAAAAAAAAA6140.6730316017932894No Hit
CCTCTTTACATTTAATCAAAAACCCAAAAAATTAAACAAAACATCTAAAA5990.6565894616843329No Hit
CAATTACAAAAATAAACTAAAATCCCAACACATCAAAAATACAATAATAC3540.38803450657137534No Hit
ACCCCACTCCAACTATCCAAAAAAAAACTCTAAAAATAAAAAAAAAATAA3390.3715923664624188No Hit
ACCCCACTCCAACTATCCAAAAAAAAAAAACTCTAAAAATAAAAAAAAAT3190.34966951298381No Hit
ACCCCACTCCAACTATCCAAAAAAAAAACTCTAAAAATAAAAAAAAAAAT2810.3080160913744533No Hit
CCCCCACTCCAACTATCCAAAAAAAAAAACTCTAAAAATAAAAAAAAAAT2560.28061252452619234No Hit
ACCCCACTCCAACTATCCAAAAAAAAAAAAACTCTAAAAATAAAAAAAAA2360.25868967104758356No Hit
CCTCAAACTAATACACCACTACATACCACCCCCTAAAACCCCCTCCTTCC2120.23238224687325304No Hit
CTCTTTACATTTAATCAAAAACCCAAAAAATTAAACAAAACATCTAAAAA1880.2060748226989225No Hit
ACCCCACTCCAACTATCCAAAAAAAAACTCTAAAAATAAAAAAAAATAAA1710.18744039724210504No Hit
ACTCAAACTAATACACCACTACATACCACCCCCTAAAAACCCCTCCTTCC1620.17757511317673108No Hit
TCTCTTTACATTTAATCAAAAACCCAAAAATTAAACAAAACATCTAAAAA1340.1468831183066788No Hit
GCCAAACAACCAAACTAAACAACGCTAAAAACGAAAAACCCAAATATCCT1240.1359216915673744No Hit
TCTCTTTACATTTAATCAAAACCCAAAAAATTAAACAAAACATCTAAAAA1240.1359216915673744No Hit
ACCCCACTCCAACTATCCAAAAAAAAAAACTCTAAAAATAAAAAAAATAA1140.12496026482807002No Hit
CCCCCACTCCAACTATCCAAAAAAAAAACTCTAAAAATAAAAAAAAAATA1130.12386412215413958No Hit
CCAAACAACCAAACTAAACAACGCTAAAAACGAAAAACCCAAATATCCTA1120.12276797948020915No Hit
CCCCCACTCCAACTATCCAAAAAAAAAAACTCTAAAAATAAAAAAAAATA1080.11838340878448739No Hit
ACCAAACAACCAAACTAAACAATGCTAAAAACGAAAAACCCAAATATCCT940.10303741134946125No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)