FastQCFastQC Report
Thu 1 Sep 2022
EGAF00000888169

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000888169
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences94184
Sequences flagged as poor quality0
Sequence length151
%GC30

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCAAAAAAACCAACAAAAAAACTAAATAAAACCGAAAACTTCTCCATCTT1195712.695362269599933No Hit
CACACACACAAAACTATAATAAATACCCTAAAAAACACTCCGTAAAATTC1059911.253503779835217No Hit
ACCAAACAACCAAACTAAACAACGCTAAAAACGAAAAACCCAAATATCCT965910.255457402531215No Hit
AAATTACAAAAATAAACTAAAATCCCAACACATCAAAAATACAATAATAC89629.51541663127495No Hit
CTATTAACCCCCTCCCTAAACAATCACCGTTTATATTATTTATTTCCTAA63646.756986324641128No Hit
TCTCTTTACATTTAATCAAAAACCCAAAAAATTAAACAAAACATCTAAAA55445.88635012316317No Hit
AAAAACTAACACACACTTATACCCCCGAAACAACCATAAATACACAAAAA33293.534570627707466No Hit
TCTCTTTACATTTAATCAAAAACCCAAAAAATTAAACAAAACGTCTAAAA21202.2509131062600867No Hit
ACTCAAACTAATACACCACTACATACCACCCCCTAAAACCCCCTCCTTCC21012.230739828420963No Hit
ACCCCACTCCAACTATCCAAAAAAAAAAACTCTAAAAATAAAAAAAAAAT18842.0003397604688695No Hit
ACTCAAACTAATACACCACTACATACCGCCCCCTAAAACCCCCTCCTTCC16741.7773719527732947No Hit
ACCCCACTCCAACTATCCAAAAAAAAAACTCTAAAAATAAAAAAAAAATA9571.0160961522126901No Hit
CCCAAACAACCAAACTAAACAACGCTAAAAACGAAAAACCCAAATATCCT6470.6869531979954132No Hit
ACCAAACAACCAAACTAAACAACGTTAAAAACGAAAAACCCAAATATCCT6350.674212180412809No Hit
ACCCCACTCCAACTATCCAAAAAAAAAAACTCTAAAAATAAAAAAAAATA6110.6487301452476004No Hit
ACCCCACTCCAACTATCCAAAAAAAAAAAACTCTAAAAATAAAAAAAAAA5850.6211246071519578No Hit
CTATTAACCCCCTCCCTAAACAATCACCATTTATATTATTTATTTCCTAA4220.4480591183215833No Hit
ACCCCACTCCAACTATCCAAAAAAAAAAACTCTAAAAATAAAAAAAAAAA4000.4247005860868088No Hit
ACCCCACTCCAACTATCCAAAAAAAAACTCTAAAAATAAAAAAAAAATAA3930.4172683258302896No Hit
CCTCTTTACATTTAATCAAAAACCCAAAAAATTAAACAAAACATCTAAAA3650.387539284804213No Hit
ACCCCACTCCAACTATCCAAAAAAAAAACTCTAAAAATAAAAAAAAATAA3300.35037798352161725No Hit
CAATTACAAAAATAAACTAAAATCCCAACACATCAAAAATACAATAATAC2630.27924063535207677No Hit
ACCCCACTCCAACTATCCAAAAAAAAAAACTCTAAAAACAAAAAAAAAAT2520.26756136923468954No Hit
CACACACACAAAACTATAATAAATACCCTAAAAACACTCCGTAAAATTCA1970.20916503864775332No Hit
CCAAAAAACCAACAAAAAAACTAAATAAAACCGAAAACTTCTCCATCTTA1690.1794359976216767No Hit
ACCCCACTCCAACTATCCAAAAAAAAAAAACTCTAAAAATAAAAAAAAAT1670.1773124946912427No Hit
CCCCCACTCCAACTATCCAAAAAAAAAAACTCTAAAAATAAAAAAAAAAT1590.1688184829695065No Hit
CCTCAAACTAATACACCACTACATACCACCCCCTAAAACCCCCTCCTTCC1580.1677567315042895No Hit
CCAAAAAAACCAACAAAAAACTAAATAAAACCGAAAACTTCTCCATCTTA1530.16244797417820436No Hit
ACCCCACTCCAACTATCCAAAAAAAAAACTCTAAAAATAAAAAAAAAAAT1530.16244797417820436No Hit
ACCCCACTCCAACTATCCAAAAAAAAACTCTAAAAATAAAAAAAAATAAA1430.15183045952603416No Hit
ACCCCACTCCAACTATCCAAAAAAAAAAAAACTCTAAAAATAAAAAAAAA1410.1497069565956001No Hit
CCTCTTTACATTTAATCAAAAACCCAAAAAATTAAACAAAACGTCTAAAA1300.13802769047821284No Hit
ACCCCACTCCAACTATCCAAAAAAAAAACTCTAAAAACAAAAAAAAAATA1150.12210141849995752No Hit
ACCCCACTCCAACTATCCAAAAAAAAAAACTCTAAAAACAAAAAAAAATA1150.12210141849995752No Hit
CCTCAAACTAATACACCACTACATACCGCCCCCTAAAACCCCCTCCTTCC1060.11254565531300433No Hit
CTCTTTACATTTAATCAAAAACCCAAAAAATTAAACAAAACATCTAAAAA1020.10829864945213624No Hit
ACTCAAACTAATACACCACTACATACCGCCCCCTGAAACCCCCTCCTTCC1020.10829864945213624No Hit
CAAAACTAACACACACTTATACCCCCGAAACAACCATAAATACACAAAAA1020.10829864945213624No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)