FastQCFastQC Report
Fri 2 Sep 2022
EGAF00000888176

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000888176
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences140195
Sequences flagged as poor quality0
Sequence length151
%GC32

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGGGAGGGAAGAGTAGATTTTACGATATTTTTGGGGTTTTTAGATAGTT1681811.99614822211919No Hit
GGGAGATTAAGTAGGTGAGTGGTTCGTTTCGAGTTTGGTTTTTTTTTATT1571011.205820464353222No Hit
GGAATTGTTTTTGGGAATTTGTAGCGTTGGTTTCGTTAAGTCGGTTGGAA1526810.890545311887015No Hit
GTAAGGTTTGGGGTTATTTTAGTGGAGTCGGAGGTGTTACGTTTTGTTGT137379.798494953457684No Hit
AAAGATAATAAATTGGGTATTGTTGAAATGTAATTAATTAAATAGTTTTT131129.352687328364064No Hit
GTGTTTGGAGTGTTGTTTTTTTAGGGATGGTGTTTGTAGTGATAGGGTTG114498.166482399514962No Hit
TAGATGTAATAGGTTTTTTTGGGGGGATTTTTAGGGAGTGGTTGGGTAGA50133.5757337993509037No Hit
GTTTTATTGGGTTAATGAGAAGGGAGGTTGGTAGGGTTGAGTGTTAGGTT44883.2012553942722635No Hit
ATTATTTTTTTAGGGAGTTGGGTTGTATTTTATTTGTTGTTTTGTTTTTA35112.5043689147259176No Hit
GTTTTATTGGGTTAATGAGAAGGGAGGTCGGTAGGGTTGAGTGTTAGGTT26971.9237490638039874No Hit
GTTTTATTGGGTTAATGAGAAGGGAGGTCGGTAGGGTTGAGCGTTAGGTT23881.7033417739577017No Hit
GGGAGATTAAGTAGGTGAGTGGTTCGTTTCGAGTTTGGTTTTTTTTATTT17151.2232961232568922No Hit
GGAATTGTTTTTGGGAATTTGTAGCGTTGGCTCCGCTAAGCCGGCTGGAA12230.8723563607831948No Hit
GTAAGGTTTGGGGTTATTTTAGTGGAGTTGGAGGTGTTATGTTTTGTTGT11560.8245657833731589No Hit
GGGAGATTAAGTAGGTGAGTGGTTCGTTTCGAGTTTGGTTTTTTTTTTAT9350.6669282071400549No Hit
GGAATTGTTTTTGGGAATTTGTAGCGTTGGTTTCGCTAAGTCGGTTGGAA6240.4450943328934698No Hit
GTTTTATTGGGTTAATGAGAAGGGAGGCCGGTAGGGTTGAGCGTTAGGTT6190.44152787189272086No Hit
GGGAGATTAAGTAGGTGAGTGGTTTGTTTCGAGTTTGGTTTTTTTTTATT2010.14337173223010807No Hit
GGGAGATTAAGTAGGTGAGTGGTTCGTTTCGAGTTTGGTCTTTTTTTATT1870.133385641428011No Hit
TAGATGTAATAGGTTTTTTTGGGGGGATTTTTAGGGTGTGGTTGGGTAGA1830.13053247262741183No Hit
GTGTTTGGAGTGTTGTTTTTTAGGGATGGTGTTTGTAGTGATAGGGTTGG1770.12625271942651306No Hit
TGGGGAGGGAAGAGTAGATTTTACGATATTTTGGGGTTTTTAGATAGTTT1700.12125967402546453No Hit
GGGAGATTAAGTAGGTGAGTGGTTCGTTTCGAGTCTGGTTTTTTTTTATT1480.10556724562216913No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)