FastQCFastQC Report
Thu 1 Sep 2022
EGAF00000888179

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000888179
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences98782
Sequences flagged as poor quality0
Sequence length151
%GC29

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAATTACAAAAATAAACTAAAATCCCAACACATCAAAAATACAATAATAC1414314.317385758539006No Hit
CACACACACAAAACTATAATAAATACCCTAAAAAACACTCCGTAAAATTC1204312.191492377153732No Hit
ACCAAACAACCAAACTAAACAACGCTAAAAACGAAAAACCCAAATATCCT1127811.417059788220527No Hit
TCTCTTTACATTTAATCAAAAACCCAAAAAATTAAACAAAACATCTAAAA92519.365066510092932No Hit
CTATTAACCCCCTCCCTAAACAATCACCGTTTATATTATTTATTTCCTAA84998.603794213520683No Hit
CCAAAAAAACCAACAAAAAAACTAAATAAAACCGAAAACTTCTCCATCTT62436.319977323803933No Hit
AAAAACTAACACACACTTATACCCCCGAAACAACCATAAATACACAAAAA32923.3325909578668176No Hit
ACCCCACTCCAACTATCCAAAAAAAAAAACTCTAAAAATAAAAAAAAAAT27742.8082039237917837No Hit
ACCCCACTCCAACTATCCAAAAAAAAAACTCTAAAAATAAAAAAAAAATA14801.4982486687858112No Hit
ACCCCACTCCAACTATCCAAAAAAAAAAACTCTAAAAATAAAAAAAAATA10201.0325767852442753No Hit
ACCCCACTCCAACTATCCAAAAAAAAAAAACTCTAAAAATAAAAAAAAAA8540.8645299750966775No Hit
CCCAAACAACCAAACTAAACAACGCTAAAAACGAAAAACCCAAATATCCT7250.7339393816687251No Hit
AAAAACTAACACACACTTATACCCCCAAAACAACCATAAATACACAAAAA6850.6934461744042437No Hit
ACCCCACTCCAACTATCCAAAAAAAAAACTCTAAAAATAAAAAAAAATAA5790.586139175153368No Hit
ACCCCACTCCAACTATCCAAAAAAAAAAACTCTAAAAATAAAAAAAAAAA5450.5517199489785588No Hit
CCTCTTTACATTTAATCAAAAACCCAAAAAATTAAACAAAACATCTAAAA4150.42011702536899437No Hit
CAATTACAAAAATAAACTAAAATCCCAACACATCAAAAATACAATAATAC3490.3533032333826001No Hit
CCAAAAAAACCAACAAAAAAACTAAATAAAACCAAAAACTTCTCCATCTT3470.351278573019376No Hit
TCTCTTTACATTTAATCAAAAACCCAAAAAATTAAGCAAAACGTCTAAAA3460.350266242837764No Hit
ACCCCACTCCAACTATCCAAAAAAAAACTCTAAAAATAAAAAAAAAATAA3310.33508129011358345No Hit
TCTCTTTACATTTAATCAAAAACCCAAAAAAATTAAACAAAACATCTAAA3210.32495798829746314No Hit
ACCCCACTCCAACTATCCAAAAAAAAAAAACTCTAAAAATAAAAAAAAAT2900.29357575266749003No Hit
ACCCCACTCCAACTATCCAAAAAAAAAACTCTAAAAATAAAAAAAAAAAT2470.25004555485817254No Hit
CCCCCACTCCAACTATCCAAAAAAAAAAACTCTAAAAATAAAAAAAAAAT2170.21967564940981152No Hit
ACCCCACTCCAACTATCCAAAAAAAAAAAAACTCTAAAAATAAAAAAAAA1810.18323176287177828No Hit
AAATTACAAAAATAAACTAAAATCCCAACACATCAAAGATACAATAATAC1580.15994816869470146No Hit
AAATTACAAAAATAAACTAAAATCCCAATACATCAAAAATACAATAATAC1330.1346399141544006No Hit
CACACACACAAAACTATAATAAATACCCTAAAAACACTCCGTAAAATTCA1320.13362758397278857No Hit
CTCTTTACATTTAATCAAAAACCCAAAAAATTAAACAAAACATCTAAAAA1250.12654127270150434No Hit
ACCCCACTCCAACTATCCAAAAAAAAACTCTAAAAATAAAAAAAAATAAA1150.11641797088538397No Hit
AAATTACAAAAATAAACTAAAATCCCAACACATCAAAAATACAATAAGAC1070.1083193294324877No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)