FastQCFastQC Report
Thu 1 Sep 2022
EGAF00000888181

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000888181
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences90209
Sequences flagged as poor quality0
Sequence length151
%GC31

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACACACACAAAACTATAATAAATACCCTAAAAAACACTCCGTAAAATTC1465216.24228181223603No Hit
AAATTACAAAAATAAACTAAAATCCCAACACATCAAAAATACAATAATAC1226913.60063851722112No Hit
CCAAAAAAACCAACAAAAAAACTAAATAAAACCGAAAACTTCTCCATCTT917110.166391380017515No Hit
ACCAAACAACCAAACTAAACAACGCTAAAAACGAAAAACCCAAATATCCT47725.289937811083152No Hit
CTATTAACCCCCTCCCTAAACAATCACCGTTTATATTATTTATTTCCTAA44854.971787737365451No Hit
AAAAACTAACACACACTTATACCCCCGAAACAACCATAAATACACAAAAA41634.614838874169983No Hit
CTATTAACCCCCTCCCTAAACAATCACCATTTATATTATTTATTTCCTAA30903.4253788424658294No Hit
ACTCAAACTAATACACCACTACATACCACCCCCTAAAACCCCCTCCTTCC25652.843397000299305No Hit
ACTCAAACTAATACACCACTACATACCGCCCCCTAAAACCCCCTCCTTCC23652.6216896318549145No Hit
ACCCCACTCCAACTATCCAAAAAAAAAAACTCTAAAAATAAAAAAAAAAC15171.6816503896507No Hit
ACCCCACTCCAACTATCCAAAAAAAAAACTCTAAAAATAAAAAAAAAACA11251.2471039474996952No Hit
ACCCCACTCCAACTATCCAAAAAAAAAAACTCTAAAAATAAAAAAAAAAT11031.2227161369708122No Hit
ACCCCACTCCAACTATCCAAAAAAAAAAAACTCTAAAAATAAAAAAAAAA9010.9987916948419782No Hit
ACCCCACTCCAACTATCCAAAAAAAAAACTCTAAAAATAAAAAAAAAATA8100.8979148421997806No Hit
ACCCCACTCCAACTATCCAAAAAAAAAAACTCTAAAAATAAAAAAAAAAA5720.6340830737509561No Hit
ACCCCACTCCAACTATCCAAAAAAAAAAACTCTAAAAATAAAAAAAAACA5510.6108038000642951No Hit
ACCCCACTCCAACTATCCAAAAAAAAAACTCTAAAAATAAAAAAAAACAA4340.4811049895243269No Hit
CCCAAACAACCAAACTAAACAACGCTAAAAACGAAAAACCCAAATATCCT3620.40129033688434634No Hit
CAATTACAAAAATAAACTAAAATCCCAACACATCAAAAATACAATAATAC3590.3979647263576805No Hit
ACCCCACTCCAACTATCCAAAAAAAAACTCTAAAAATAAAAAAAAAACAA3470.38466228425101706No Hit
ACCCCACTCCAACTATCCAAAAAAAAAAACTCTAAAAATAAAAAAAAATA3250.36027447372213417No Hit
ACCCCACTCCAACTATCCAAAAAAAAAACTCTAAAAATAAAAAAAAATAA2590.2871110421354854No Hit
ACCCCACTCCAACTATCCAAAAAAAAAACTCTAAAAATAAAAAAAAAAAC2430.26937445265993415No Hit
ACCCCACTCCAACTATCCAAAAAAAAAAAAACTCTAAAAATAAAAAAAAA2220.24609517897327318No Hit
ACCCCACTCCAACTATCCAAAAAAAAAACTCTAAAAATAAAAAAAAAAAT1820.20175370528439512No Hit
CCTCAAACTAATACACCACTACATACCGCCCCCTAAAACCCCCTCCTTCC1800.19953663159995122No Hit
CCTCAAACTAATACACCACTACATACCACCCCCTAAAACCCCCTCCTTCC1800.19953663159995122No Hit
ACCCCACTCCAACTATCCAAAAAAAAACTCTAAAAATAAAAAAAAAATAA1780.19731955791550734No Hit
ACCCCACTCCAACTATCCAAAAAAAAAAAACTCTAAAAATAAAAAAAAAC1690.18734272633550977No Hit
CACACACACAAAACTATAATAAATACCCTAAAAACACTCCGTAAAATTCA1570.17404028422884635No Hit
CAAAACTAACACACACTTATACCCCCGAAACAACCATAAATACACAAAAA1390.15408662106885124No Hit
CCAAAAAACCAACAAAAAAACTAAATAAAACCGAAAACTTCTCCATCTTA1380.15297808422662926No Hit
ACCCCACTCCAACTATCCAAAAAAAAAAAACTCTAAAAATAAAAAAAAAT1310.14521832633107562No Hit
ACCCCACTCCAACTATCCAAAAAAAAACTCTAAAAATAAAAAAAAACAAA1190.1319158842244122No Hit
CCCCTCTTAACTACCTTCCTACAACCAAAAAACGATAACAACAAAAACAA1170.1296988105399683No Hit
CACACACACAAAACTATAATAAATACCTTAAAAAACACTCCGTAAAATTC1120.12415612632885853No Hit
CCAAAAAAACCAACAAAAAACTAAATAAAACCGAAAACTTCTCCATCTTA1040.11528783159108294No Hit
CCCCCACTCCAACTATCCAAAAAAAAAAACTCTAAAAATAAAAAAAAAAC980.10863661053775121No Hit
CCCCCACTCCAACTATCCAAAAAAAAAACTCTAAAAATAAAAAAAAAACA950.10531100001108537No Hit
ACCCCACTCCAACTATCCAAAAAAAAAACTCTAAAAATAAAAAAAAAAAA940.10420246316886342No Hit
CCCCCACTCCAACTATCCAAAAAAAAAAACTCTAAAAATAAAAAAAAAAT910.10087685264219756No Hit
ACCCCACTCCAACTATCCAAAAAAAAACTCTAAAAATAAAAAAAAAAACA910.10087685264219756No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)