FastQCFastQC Report
Fri 2 Sep 2022
EGAF00000888185

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000888185
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences111589
Sequences flagged as poor quality0
Sequence length151
%GC30

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCAAAAAAACCAACAAAAAAACTAAATAAAACCGAAAACTTCTCCATCTT1444812.947512747672263No Hit
ACCAAACAACCAAACTAAACAACGCTAAAAACGAAAAACCCAAATATCCT1133610.158707399474858No Hit
AAATTACAAAAATAAACTAAAATCCCAACACATCAAAAATACAATAATAC101089.058240507576912No Hit
CACACACACAAAACTATAATAAATACCCTAAAAAACACTCCGTAAAATTC73856.618035827904184No Hit
CTATTAACCCCCTCCCTAAACAATCACCGTTTATATTATTTATTTCCTAA72306.479133247900778No Hit
CACACACACAAAACTATAATAAATACCCTAAAAAACACTCCATAAAATTC61315.494269148392763No Hit
TCTCTTTACATTTAATCAAAAACCCAAAAAATTAAACAAAATATCTAAAA39613.549633028345088No Hit
AAAAACTAACACACACTTATACCCCCGAAACAACCATAAATACACAAAAA37873.3937036804702974No Hit
ACTCAAACTAATACACCACTACATACCGCCCCCTAAAACCCCCTCCTTCC34623.102456335301867No Hit
TCTCTTTACATTTAATCAAAAACCCAAAAAATTAAACAAAACATCTAAAA32982.9554884442014893No Hit
TCTCTTTACATTTAATCAAAAACCCAAAAAATTAAACAAAACGTCTAAAA27382.4536468648343477No Hit
ACCCCACTCCAACTATCCAAAAAAAAAAACTCTAAAAATAAAAAAAAAAT25652.2986136626369986No Hit
ACCCCACTCCAACTATCCAAAAAAAAAACTCTAAAAATAAAAAAAAAATA13771.2339925978367043No Hit
ACCCCACTCCAACTATCCAAAAAAAAAAACTCTAAAAATAAAAAAAAATA10750.9633566032494243No Hit
CCCAAACAACCAAACTAAACAACGCTAAAAACGAAAAACCCAAATATCCT8040.7205011246628251No Hit
ACCCCACTCCAACTATCCAAAAAAAAAAAACTCTAAAAATAAAAAAAAAA7690.6891360259523788No Hit
ACTCAAACTAATACACCACTACATACCACCCCCTAAAACCCCCTCCTTCC6570.5887677100789505No Hit
ACCCCACTCCAACTATCCAAAAAAAAAAACTCTAAAAATAAAAAAAAAAA6460.5789101076270958No Hit
ACCCCACTCCAACTATCCAAAAAAAAAACTCTAAAAATAAAAAAAAATAA5990.5367912607873536No Hit
CCAAAAAAACCAACAAAAAAACTAAATAAAACCGAAAACTTCTCCATCTC3610.3235085895563183No Hit
ACCCCACTCCAACTATCCAAAAAAAAACTCTAAAAATAAAAAAAAAATAA3540.317235569814229No Hit
CAATTACAAAAATAAACTAAAATCCCAACACATCAAAAATACAATAATAC3290.2948319278781959No Hit
ACCCCACTCCAACTATCCAAAAAAAAAACTCTAAAAATAAAAAAAAAAAT2930.26257068349030815No Hit
ACCCCACTCCAACTATCCAAAAAAAAAAAACTCTAAAAATAAAAAAAAAT2790.2500246440061296No Hit
CCTCAAACTAATACACCACTACATACCGCCCCCTAAAACCCCCTCCTTCC2600.23299787613474446No Hit
CCCCCACTCCAACTATCCAAAAAAAAAAACTCTAAAAATAAAAAAAAAAT2340.20969808852127No Hit
CCTCTTTACATTTAATCAAAAACCCAAAAAATTAAACAAAATATCTAAAA2170.1944636120047675No Hit
CCAAAAAACCAACAAAAAAACTAAATAAAACCGAAAACTTCTCCATCTTA2110.18908673794011954No Hit
CCAAAAAAACCAACAAAAAACTAAATAAAACCGAAAACTTCTCCATCTTA1890.1693715330364104No Hit
ACCCCACTCCAACTATCCAAAAAAAAAAAAACTCTAAAAATAAAAAAAAA1820.16309851329432112No Hit
CCTCTTTACATTTAATCAAAAACCCAAAAAATTAAACAAAACATCTAAAA1710.15324091084246655No Hit
CCTCTTTACATTTAATCAAAAACCCAAAAAATTAAACAAAACGTCTAAAA1690.1514486194875839No Hit
ACCCCACTCCAACTATCCAAAAAAAAACTCTAAAAATAAAAAAAAATAAA1510.13531799729364005No Hit
CTATTAACCCCCTCCCTAAACAATCCCTTCTCATTAACCCAATAAAACTG1500.13442185161619874No Hit
CACACACACAAAACTATAATAAATACCCTGAAAAACACTCCATAAAATTC1250.1120182096801656No Hit
CACACACACAAAACTATAATAAATACCCTAAAAACACTCCGTAAAATTCA1240.11112206400272429No Hit
ACCAAACAACCAAACTAAACAACGCTAAAAACGAAAAACCCAAATACCCT1230.11022591832528296No Hit
CAAAACTAACACACACTTATACCCCCGAAACAACCATAAATACACAAAAA1190.10664133561551765No Hit
CCCCCACTCCAACTATCCAAAAAAAAAACTCTAAAAATAAAAAAAAAATA1160.10395289858319368No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)