FastQCFastQC Report
Fri 2 Sep 2022
EGAF00000888203

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000888203
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences122815
Sequences flagged as poor quality0
Sequence length151
%GC30

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCAAAAAAACCAACAAAAAAACTAAATAAAACCGAAAACTTCTCCATCTT1582812.887676586736148No Hit
AAATTACAAAAATAAACTAAAATCCCAACACATCAAAAATACAATAATAC104518.509546879452836No Hit
CACACACACAAAACTATAATAAATACCCTAAAAAACACTCCGTAAAATTC100698.198509953995847No Hit
CTATTAACCCCCTCCCTAAACAATCACCGTTTATATTATTTATTTCCTAA77716.327403004518992No Hit
ACCAAACAACCAAACTAAACAACGCTAAAAACGAAAAACCCAAATATCCT69745.6784594715629195No Hit
TCTCTTTACATTTAATCAAAAACCCAAAAAATTAAACAAAATATCTAAAA68345.564466881081301No Hit
AAAAACTAACACACACTTATACCCCCGAAACAACCATAAATACACAAAAA37113.02161788055205No Hit
ACCAAACAACCAAACTAAACAACACTAAAAACGAAAAACCCAAATATCCT33152.6991816960469No Hit
ACCCCACTCCAACTATCCAAAAAAAAAAACTCTAAAAATAAAAAAAAAAT27162.2114562553434025No Hit
TCTCTTTACATTTAATCAAAAACCCAAAAAATTAAACAAAACATCTAAAA26372.1471318650002034No Hit
CACACACACAAAACTATAATAAATACCCTAAAAAACACTCCATAAAATTC18191.4810894434718886No Hit
ACTCAAACTAATACACCACTACATACCGCCCCCTAAAACCCCCTCCTTCC18031.468061718845418No Hit
CTATTAACCCCCTCCCTAAACAATCACCATTTATATTATTTATTTCCTAA16351.3312706102674754No Hit
ACCCCACTCCAACTATCCAAAAAAAAAACTCTAAAAATAAAAAAAAAATA15691.2775312461832837No Hit
TCTCTTTACATTTAATCAAAAACCCAAAAAATTAAACAAAACGTCTAAAA14861.209949924683467No Hit
ACTCAAACTAATACACCACTACATACCGCCCCCTGAAACCCCCTCCTTCC13651.1114277571957822No Hit
ACTCAAACTAATACACCACTACATACCACCCCCTAAAACCCCCTCCTTCC12090.9844074420876928No Hit
ACCCCACTCCAACTATCCAAAAAAAAAAACTCTAAAAATAAAAAAAAATA9810.7987623661604853No Hit
ACCCCACTCCAACTATCCAAAAAAAAAAAACTCTAAAAATAAAAAAAAAA8140.6627854903716973No Hit
ACCCCACTCCAACTATCCAAAAAAAAAACTCTAAAAATAAAAAAAAATAA6090.49586776859504134No Hit
CCCAAACAACCAAACTAAACAACGCTAAAAACGAAAAACCCAAATATCCT5970.48609697512518835No Hit
ACCCCACTCCAACTATCCAAAAAAAAAAACTCTAAAAATAAAAAAAAAAA5520.4494564996132394No Hit
ACCAAACAACCAAACTAAACAACGCTAAAAACAAAAAACCCAAATATCCT5320.43317184383015106No Hit
ACCCCACTCCAACTATCCAAAAAAAAACTCTAAAAATAAAAAAAAAATAA4450.36233359117371655No Hit
CCTCTTTACATTTAATCAAAAACCCAAAAAATTAAACAAAATATCTAAAA3820.3110369254569882No Hit
CAATTACAAAAATAAACTAAAATCCCAACACATCAAAAATACAATAATAC3550.28905264014981885No Hit
ACCCCACTCCAACTATCCAAAAAAAAAACTCTAAAAATAAAAAAAAAAAT2720.22147131865000202No Hit
CCCCCACTCCAACTATCCAAAAAAAAAAACTCTAAAAATAAAAAAAAAAT2580.21007205960184017No Hit
CCCAAACAACCAAACTAAACAACACTAAAAACGAAAAACCCAAATATCCT2540.2068151284452225No Hit
ACCCCACTCCAACTATCCAAAAAAAAAAAACTCTAAAAATAAAAAAAAAT2340.1905304726621341No Hit
CCAAAAAACCAACAAAAAAACTAAATAAAACCGAAAACTTCTCCATCTTA2030.1652892561983471No Hit
CCAAAAAAACCAACAAAAAACTAAATAAAACCGAAAACTTCTCCATCTTA1930.1571469283068029No Hit
ACCCCACTCCAACTATCCAAAAAAAAAAAAACTCTAAAAATAAAAAAAAA1860.15144729878272198No Hit
CACACACACAAAACTATAATAAATACCCTAAAAAACACTCCGTAAGATTC1860.15144729878272198No Hit
CCTCAAACTAATACACCACTACATACCGCCCCCTAAAACCCCCTCCTTCC1690.13760534136709685No Hit
CCCCCACTCCAACTATCCAAAAAAAAAACTCTAAAAATAAAAAAAAAATA1600.13027724626470708No Hit
CAAAACTAACACACACTTATACCCCCGAAACAACCATAAATACACAAAAA1450.11806375442739078No Hit
CCTCTTTACATTTAATCAAAAACCCAAAAAATTAAACAAAACATCTAAAA1440.11724952163823638No Hit
CTCTTTACATTTAATCAAAAACCCAAAAAATTAAACAAAATATCTAAAAA1300.1058502625900745No Hit
CACACACACAAAACTATAATAAATACCCTAAAGAACACTCCGTAAAATTC1260.10259333143345682No Hit
ACCCCACTCCAACTATCCAAAAAAAAACTCTAAAAATAAAAAAAAATAAA1240.10096486585514798No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)