FastQCFastQC Report
Fri 2 Sep 2022
EGAF00000888205

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000888205
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences174478
Sequences flagged as poor quality0
Sequence length151
%GC30

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCAAAAAAACCAACAAAAAAACTAAATAAAACCGAAAACTTCTCCATCTT2377113.624067217643484No Hit
CACACACACAAAACTATAATAAATACCCTAAAAAACACTCCGTAAAATTC2199612.606746982427582No Hit
AAATTACAAAAATAAACTAAAATCCCAACACATCAAAAATACAATAATAC1800710.32049885945506No Hit
TCTCTTTACATTTAATCAAAAACCCAAAAAATTAAACAAAACGTCTAAAA123567.081695113424042No Hit
ACCAAACAACCAAACTAAACAACGCTAAAAACGAAAAACCCAAATATCCT111236.3750157612994185No Hit
ACCAAACAACCAAACTAAACAACGCTAAAAACAAAAAACCCAAATATCCT72024.127741033253477No Hit
AAAAACTAACACACACTTATACCCCCGAAACAACCATAAATACACAAAAA62323.571797017389012No Hit
ACTCAAACTAATACACCACTACATACCACCCCCTAAAACCCCCTCCTTCC47612.7287107830213553No Hit
ACCCCACTCCAACTATCCAAAAAAAAAAACTCTAAAAATAAAAAAAAAAT42522.4369834592326827No Hit
CTATTAACCCCCTCCCTAAACAATCACCGTTTATATTATTTATTTCCTAA29001.6621006659865427No Hit
ACCCCACTCCAACTATCCAAAAAAAAAACTCTAAAAATAAAAAAAAAATA28351.6248466855420167No Hit
CCAAAAAAACCAACAAAAAAACTAAATAAAACCAAAAACTTCTCCATCTT27091.552631277295705No Hit
ACTCAAACTAATACACCACTACATACCGCCCCCTGAAACCCCCTCCTTCC19841.1371061107990692No Hit
TCTCTTTACATTTAATCAAAAACCCAAAAAATTAAACAAAACATCTAAAA18671.0700489459989224No Hit
ACCCCACTCCAACTATCCAAAAAAAAAAACTCTAAAAATAAAAAAAAATA17471.0012723667167207No Hit
ACCCCACTCCAACTATCCAAAAAAAAAAAACTCTAAAAATAAAAAAAAAA14850.8511101686172468No Hit
ACCCCACTCCAACTATCCAAAAAAAAAACTCTAAAAATAAAAAAAAATAA11510.659682022948452No Hit
ACCCCACTCCAACTATCCAAAAAAAAAAACTCTAAAAATAAAAAAAAAAA8550.49003312738568766No Hit
ACCCCACTCCAACTATCCAAAAAAAAACTCTAAAAATAAAAAAAAAATAA7520.430999896835131No Hit
CCCAAACAACCAAACTAAACAACGCTAAAAACGAAAAACCCAAATATCCT7080.40578181776499045No Hit
CCTCTTTACATTTAATCAAAAACCCAAAAAATTAAACAAAACGTCTAAAA6060.3473217253751189No Hit
CAATTACAAAAATAAACTAAAATCCCAACACATCAAAAATACAATAATAC5200.29803184355620765No Hit
CCCAAACAACCAAACTAAACAACGCTAAAAACAAAAAACCCAAATATCCT5140.2945930145920976No Hit
ACCCCACTCCAACTATCCAAAAAAAAAAAACTCTAAAAATAAAAAAAAAT4800.27510631712880707No Hit
ACCCCACTCCAACTATCCAAAAAAAAAACTCTAAAAATAAAAAAAAAAAT4510.25848531046894163No Hit
ACCCCACTCCAACTATCCAAAAAAAAAAAAACTCTAAAAATAAAAAAAAA3890.22295074450647073No Hit
CACACACACAAAACTATAATAAATACCCTAAAAACACTCCGTAAAATTCA3380.193720698311535No Hit
ACCCCACTCCAACTATCCAAAAAAAAACTCTAAAAATAAAAAAAAATAAA3300.18913559302605487No Hit
TCTCTTTACATTTAATCAAAAACCCAAAAAATTAAACAAAACTTCTAAAA3090.17709969165166956No Hit
CCAAAAAACCAACAAAAAAACTAAATAAAACCGAAAACTTCTCCATCTTA3060.1753802771696145No Hit
CCAAAAAAACCAACAAAAAACTAAATAAAACCGAAAACTTCTCCATCTTA3020.17308772452687446No Hit
CCCCCACTCCAACTATCCAAAAAAAAAAACTCTAAAAATAAAAAAAAAAT2870.16449065211659925No Hit
CCTCAAACTAATACACCACTACATACCACCCCCTAAAACCCCCTCCTTCC2710.15532044154563898No Hit
AAAAACTAACACACACTTATACCCCCGAAACAACCCTAAATACACAAAAA2650.1518816125815289No Hit
AAATTACAAAAATAAACTAAAATCCCAATACATCAAAAATACAATAATAC2220.12723667167207328No Hit
CCCCCACTCCAACTATCCAAAAAAAAAACTCTAAAAATAAAAAAAAAATA2170.12437098086864819No Hit
CACACACACAAAACTATAATAAATACCCTAAAAAACACCCCGTAAAATTC1860.10660369788741274No Hit
CAAAACTAACACACACTTATACCCCCGAAACAACCATAAATACACAAAAA1750.10029917811987757No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)