FastQCFastQC Report
Fri 2 Sep 2022
EGAF00000888210

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000888210
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences136244
Sequences flagged as poor quality0
Sequence length151
%GC33

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTAAGGTTTGGGGTTATTTTAGTGGAGTCGGAGGTGTTACGTTTTGTTGT1604011.77299550805907No Hit
TGGGGAGGGAAGAGTAGATTTTACGATATTTTTGGGGTTTTTAGATAGTT1410610.353483456152198No Hit
GGAATTGTTTTTGGGAATTTGTAGTGTTGGTTTCGTTAAGTCGGTTGGAA103757.615014239159155No Hit
GTGTTTGGAGTGTTGTTTTTTTAGGGATGGTGTTTGTAGTGATAGGGTTG102407.515927306890578No Hit
GGGAGATTAAGTAGGTGAGTGGTTCGTTTCGAGTTTGGTTTTTTTTTATT86506.348903437949562No Hit
GGAATTGTTTTTGGGAATTTGTAGCGTTGGTTTCGTTAAGTCGGTTGGAA75265.52391297965415No Hit
AAAGATAATAAATTGGGTATTGTTGAAATGTAATTAGTTAAATAGTTTTT65664.819294794633159No Hit
AAAGATAATAAATTGGGTATTGTTGAAATGTAATTAATTAAATAGTTTTT59644.377440474442911No Hit
TAGATGTAATAGGTTTTTTTGGGGGGATTTTTAGGGAGTGGTTGGGTAGG56014.111006723231848No Hit
GTTTTATTGGGTTAATGAGAAGGGAGGTCGGTAGGGTTGAGCGTTAGGTT51743.7975984263527205No Hit
ATTATTTTTTTAGGGAGTTGGGTTGTATTTTATTTGTTGTTTTGTTTTTA40923.0034350136519774No Hit
GTTTTATTGGGTTAATGAGAAGGGAGGCCGGTAGGGCTGAGTGTTAGGTT25121.8437509174715951No Hit
GTTTTATTGGGTTAATGAGAAGGGAGGTCGGTAGGGTTGAGTGTTAGGTT23101.6954875077067615No Hit
GTTTTATTGGGTTAATGAGAAGGGAGGTTGGTAGGGTTGAGTGTTAGGTT18521.3593259152696633No Hit
GTGTTTGGAGTGTTGTTTTTTTAGGGATGGCGTTTGTAGCGATAGGGTCG14731.0811485276415842No Hit
GGGAGATTAAGTAGGTGAGTGGTTCGTTTCGAGTTTGGTTTTTTTTATTT9590.7038842077449282No Hit
GGGAGATTAAGTAGGTGAGTGGTTCGTTTCGAGTTTGGTTTTTTTTTTAT7560.5548868207040311No Hit
TAGATGTAATAGGTTTTTTTGGGGGGATTTTTAGGGAGTGGTTGGGTAGA5780.4242388655647221No Hit
TGGGGAGGGAAGAGTAGATTTTACGATATTTTTGGGGTCTTTAGATAGTT4650.3412994333695429No Hit
GTTTTATTGGGTTAATGAGAAGGGAAGTCGGTAGGGTTGAGCGTTAGGTT3150.23120284196001292No Hit
TAGATGTAATAGGTTTTTTTGGGGGGATTTTTAGGGTGTGGTTGGGTAGG1740.12771204603505476No Hit
GTGTTTGGAGTGTTGTTTTTTAGGGATGGTGTTTGTAGTGATAGGGTTGG1550.11376647778984764No Hit
GTAAGGTTTGGGGTTATTTTAGTGGAGTCGGAGGTGTTACGCTTTGTTGT1470.10789465958133936No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)