FastQCFastQC Report
Fri 2 Sep 2022
EGAF00000888212

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000888212
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences160304
Sequences flagged as poor quality0
Sequence length151
%GC32

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGAATTGTTTTTGGGAATTTGTAGCGTTGGTTTCGTTAAGTCGGTTGGAA1835611.450743587184348No Hit
GGGAGATTAAGTAGGTGAGTGGTTCGTTTCGAGTTTGGTTTTTTTTTATT1803611.251122866553548No Hit
GTGTTTGGAGTGTTGTTTTTTTAGGGATGGTGTTTGTAGTGATAGGGTTG138438.635467611538077No Hit
TGGGGAGGGAAGAGTAGATTTTACGATATTTTTGGGGTTTTTAGATAGTT107876.729089729513923No Hit
AAAGATAATAAATTGGGTATTGTTGAAATGTAATTAATTAAATAGTTTTT100136.246257111488172No Hit
GTAAGGTTTGGGGTTATTTTAGTGGAGTCGGAGGTGTTACGTTTTGTTGT92285.756562531190737No Hit
GTTTTATTGGGTTAATGAGAAGGGAGGTCGGTAGGGTTGAGCGTTAGGTT79974.988646571514123No Hit
GTAAGGTTTGGGGTTATTTTAGTGGAGTTGGAGGTGTTACGTTTTGTTGT75594.7154157101507135No Hit
TAGATGTAATAGGTTTTTTTGGGGGGATTTTTAGGGAGTGGTTGGGTAGA65064.0585387763249825No Hit
ATTATTTTTTTAGGGAGTTGGGTTGTATTTTATTTGTTGTTTTGTTTTTA41272.574483481385368No Hit
AAAGATAATAAATTGGGTATTGTTGAAACGTAATTAATTAAATAGTTTTT39302.4515919752470303No Hit
TGGGGAGGGAAGAGTAGATTTTATGATATTTTTGGGGTTTTTAGATAGTT39302.4515919752470303No Hit
GTTTTATTGGGTTAATGAGAAGGGAGGTCGGTAGGGTTGAGTGTTAGGTT24281.5146222177862063No Hit
GGGAGATTAAGTAGGTGAGTGGTTCGTTTCGAGTTTGGTTTTTTTTATTT20081.2526200219582793No Hit
GTTTTATTGGGTTAATGAGAAGGGAGGTTGGTAGGGTTGAGTGTTAGGTT16181.00933226868949No Hit
GGGAGATTAAGTAGGTGAGTGGTTCGTTTCGAGTTTGGTTTTTTTTTTAT11190.6980487074558339No Hit
GGGAGATTAAGTAGGTGAGTGGTTTGTTTCGAGTTTGGTTTTTTTTTATT2970.18527298133546263No Hit
GGGAGATTAAGTAGGTGAGTGGTTCGTTTTGAGTTTGGTTTTTTTTTATT2820.1759157600558938No Hit
GTGTTTGGAGTGTTGTTTTTTAGGGATGGTGTTTGTAGTGATAGGGTTGG2230.13911068968958978No Hit
GTAAGGTTTGGGGTTATTTTAGTGGAGTTGGAGGTGTTACGTTTTGTTAT2030.12663439465016468No Hit
TAGATGTAATAGGTTTTTTTGGGGGGATTTTTAGGGTGTGGTTGGGTAGA1970.12289150613833716No Hit
GTTTTATTGGGTTAATGAGAAGGGCGGTCGGTAGGGTTGAGCGTTAGGTT1870.11665335861862462No Hit
GGAATTGTTTTTGGGAATTTGTAGCGTTGGTTTCGTTAGGTCGGTTGGAA1830.11415809961073958No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)