FastQCFastQC Report
Fri 2 Sep 2022
EGAF00000888227

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000888227
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences210947
Sequences flagged as poor quality0
Sequence length151
%GC30

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCAAAAAAACCAACAAAAAAACTAAATAAAACCGAAAACTTCTCCATCTT3228515.30479219898837No Hit
CACACACACAAAACTATAATAAATACCCTAAAAAACACTCCGTAAAATTC2176210.316335382821277No Hit
AAATTACAAAAATAAACTAAAATCCCAACACATCAAAAATACAATAATAC198509.40994657425799No Hit
TCTCTTTACATTTAATCAAAAACCCAAAAAATTAAACAAAACGTCTAAAA169828.050363361413055No Hit
ACCAAACAACCAAACTAAACAACGCTAAAAACGAAAAACCCAAATATCCT114005.404201055241364No Hit
ACCAAACAACCAAACTAAACAACACTAAAAACGAAAAACCCAAATATCCT84834.021389258913376No Hit
AAAAACTAACACACACTTATACCCCCGAAACAACCATAAATACACAAAAA72923.456792464457897No Hit
TCTCTTTACATTTAATCAAAAACCCAAAAAATTAAACAAAACATCTAAAA67813.214551522420324No Hit
ACCCCACTCCAACTATCCAAAAAAAAAAACTCTAAAAATAAAAAAAAAAT48452.2967854484775794No Hit
ACTCAAACTAATACACCACTACATACCACCCCCTAAAACCCCCTCCTTCC44692.1185416241994433No Hit
ACTCAAACTAATACACCACTACATACCGCCCCCTAAAACCCCCTCCTTCC40131.902373581989789No Hit
ACCCCACTCCAACTATCCAAAAAAAAAACTCTAAAAATAAAAAAAAAATA34341.6278970547104248No Hit
CACACACACAAAACTATAATAAATACCCTAAAAAACACTTCGTAAAATTC23031.0917434237035843No Hit
ACCCCACTCCAACTATCCAAAAAAAAAAACTCTAAAAATAAAAAAAAATA19040.9025963867701365No Hit
ACCCCACTCCAACTATCCAAAAAAAAAAAACTCTAAAAATAAAAAAAAAA13770.6527706011462595No Hit
ACCCCACTCCAACTATCCAAAAAAAAAACTCTAAAAATAAAAAAAAATAA13300.6304901231114924No Hit
ACCCCACTCCAACTATCCAAAAAAAAAAACTCTAAAAATAAAAAAAAAAA9630.45651277335065205No Hit
CTATTAACCCCCTCCCTAAACAATCACCGTTTATATTATTTATTTCCTAA9040.4285436626261573No Hit
CCTCTTTACATTTAATCAAAAACCCAAAAAATTAAACAAAACGTCTAAAA8840.41906260814327767No Hit
ACCCCACTCCAACTATCCAAAAAAAAACTCTAAAAATAAAAAAAAAATAA8670.4110037118328301No Hit
CCCAAACAACCAAACTAAACAACGCTAAAAACGAAAAACCCAAATATCCT8050.38161244293590335No Hit
AAAAACTAACACACACTTATACCCCCAAAACAACCATAAATACACAAAAA7980.3782940738668955No Hit
CCCAAACAACCAAACTAAACAACACTAAAAACGAAAAACCCAAATATCCT6230.2953348471416991No Hit
CACACACACAAAACTATAATAAATACCCTAAAAAACGCTCCGTAAAATTC6010.28490568721053156No Hit
CAATTACAAAAATAAACTAAAATCCCAACACATCAAAAATACAATAATAC5800.274950580003508No Hit
CTATTAACCCCCTCCCTAAACAATCCCTTCTCATTAACCCAATAAAACTG5480.25978089283090067No Hit
ACCCCACTCCAACTATCCAAAAAAAAAACTCTAAAAATAAAAAAAAAAAT4810.22801936031325404No Hit
CACACACACAAAACTATAATAAATACCCTAAAAACACTCCGTAAAATTCA4590.2175902003820865No Hit
ACCCCACTCCAACTATCCAAAAAAAAAAAACTCTAAAAATAAAAAAAAAT4450.2109534622440708No Hit
TCTCTTTACATTTAATCAAAAACCCAAAAAATTAAACAAAACTTCTAAAA3860.182984351519576No Hit
CCAAAAAACCAACAAAAAAACTAAATAAAACCGAAAACTTCTCCATCTTA3840.18203624607128804No Hit
CCAAAAAAACCAACAAAAAACTAAATAAAACCGAAAACTTCTCCATCTTA3710.17587356065741633No Hit
CCCCCACTCCAACTATCCAAAAAAAAAAACTCTAAAAATAAAAAAAAAAT3600.17065898069183255No Hit
ACCCCACTCCAACTATCCAAAACCCACCAACCTCCCTAAAAACCAAAATC3460.16402224255381684No Hit
ACCCCACTCCAACTATCCAAAAAAAAACTCTAAAAATAAAAAAAAATAAA3370.15975576803652103No Hit
CCTCTTTACATTTAATCAAAAACCCAAAAAATTAAACAAAACATCTAAAA3350.15880766258823306No Hit
ACCCCACTCCAACTATCCAAAAAAAAAAAAACTCTAAAAATAAAAAAAAA3260.15454118807093725No Hit
CTCTTTACATTTAATCAAAAACCCAAAAAATTAAACAAAACGTCTAAAAA3010.14268986996733776No Hit
CCTCAAACTAATACACCACTACATACCACCCCCTAAAACCCCCTCCTTCC2940.13937150089832992No Hit
TCTCTTTACATTTAATCAAAAACCCAAAAAAATTAAACAAAACGTCTAAA2860.13557907910517808No Hit
CCCCCACTCCAACTATCCAAAAAAAAAACTCTAAAAATAAAAAAAAAATA2580.12230560282914665No Hit
CCTCAAACTAATACACCACTACATACCGCCCCCTAAAACCCCCTCCTTCC2480.11756507558770687No Hit
TCTCTTTACATTTAATCAAAAACCCAAAAAAATTAAACAAAACATCTAAA2370.11235049562212308No Hit
CACACACACAAAACTATAATAAATACCCTAAAAAACACTCCGTAAATTTC2130.10097323024266759No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)