FastQCFastQC Report
Fri 2 Sep 2022
EGAF00000888234

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000888234
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences176434
Sequences flagged as poor quality0
Sequence length151
%GC32

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGAGATTAAGTAGGTGAGTGGTTCGTTTCGAGTTTGGTTTTTTTTTATT2158112.231769386852873No Hit
GGAATTGTTTTTGGGAATTTGTAGCGTTGGTTTCGTTAAGTCGGTTGGAA1921210.889057664622465No Hit
GTAAGGTTTGGGGTTATTTTAGTGGAGTCGGAGGTGTTACGTTTTGTTGT171029.693143044991329No Hit
GTGTTTGGAGTGTTGTTTTTTTAGGGATGGTGTTTGTAGTGATAGGGTTG158578.987496740990965No Hit
TGGGGAGGGAAGAGTAGATTTTACGATATTTTTGGGGTTTTTAGATAGTT149548.475690626523233No Hit
AAAGATAATAAATTGGGTATTGTTGAAATGTAATTAATTAAATAGTTTTT135707.691261321513994No Hit
TAGATGTAATAGGTTTTTTTGGGGGGATTTTTAGGGAGTGGTTGGGTAGA71394.046272260448666No Hit
GTTTTATTGGGTTAATGAGAAGGGAGGTCGGTAGGGTTGAGTGTTAGGTT71274.039470850289627No Hit
GTTTTATTGGGTTAATGAGAAGGGAGGTCGGTAGGGTTGAGCGTTAGGTT53683.0424974778103997No Hit
ATTATTTTTTTAGGGAGTTGGGTTGTATTTTATTTGTTGTTTTGTTTTTA42592.4139338222791524No Hit
AAAGATAATAAATTGGGTATTGTTGAAATGTAATTAATTAAATAGTTCTT25241.4305632701180044No Hit
GGGAGATTAAGTAGGTGAGTGGTTCGTTTCGAGTTTGGTTTTTTTTATTT24471.3869208882641668No Hit
GGGAGATTAAGTAGGTGAGTGGTTCGTTTCGAGTTTGGTTTTTTTTTTAT17590.9969733724792272No Hit
GTTTTATTGGGTTAATGAGAAGGGAGGCCGGTAGGGTTGAGCGTTAGGTT13430.7611911536325199No Hit
GTTTTATTGGGTTAATGAGAAGGGAGGTTGGTAGGGTTGAGTGTTAGGTT9440.5350442658444517No Hit
GTTTTATTGGGTTAATGAGAAGGGAGGTTGGTAGGGTTGAGCGTTAGGTT8980.5089721935681332No Hit
GGGAGATTAAGTAGGTGAGTGGTTCGTTTCGAGTTTGGTTTTCTTTTATT2980.16890168561615107No Hit
GTGTTTGGAGTGTTGTTTTTTAGGGATGGTGTTTGTAGTGATAGGGTTGG2430.1377285557205527No Hit
GTGTTTGGAGTGTTGTTTTTTTAGGGAGGGTGTTTGTAGTGATAGGGTTG2320.13149392974143306No Hit
TAGATGTAATAGGTTTTTTTGGGGGGATTTTTAGGGTGTGGTTGGGTAGA2240.1269596563020733No Hit
GGGAGATTAAGTAGGTGAGTGGTTCGTTTCGAGTTTGGTTTTTTTTTTTT2140.12129181450287359No Hit
GTTTTATTGGGTTAATGAGAAGGGCGGTCGGTAGGGTTGAGTGTTAGGTT1890.10712221000487435No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)