FastQCFastQC Report
Fri 2 Sep 2022
EGAF00000888237

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000888237
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences208410
Sequences flagged as poor quality0
Sequence length151
%GC29

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CACACACACAAAACTATAATAAATACCCTAAAAAACACTCCGTAAAATTC2699212.951393887049568No Hit
CCAAAAAAACCAACAAAAAAACTAAATAAAACCGAAAACTTCTCCATCTT2524212.111702893335252No Hit
TCTCTTTACATTTAATCAAAAACCCAAAAAATTAAACAAAACGTCTAAAA2097510.064296338947267No Hit
AAATTACAAAAATAAACTAAAATCCCAACACATCAAAAATACAATAATAC182468.754858212177918No Hit
CTATTAACCCCCTCCCTAAACAATCACCGTTTATATTATTTATTTCCTAA121475.828415143227293No Hit
CTATTAACCCCCTCCCTAAACAATCACCATTTATATTATTTATTTCCTAA114085.473825632167363No Hit
AAAAACTAACACACACTTATACCCCCGAAACAACCATAAATACACAAAAA77163.7023175471426515No Hit
CCAAAAAAACCAACAAAAAAACTAAATAAAACCAAAAACTTCTCCATCTT76563.6735281416438754No Hit
ACTCAAACTAATACACCACTACATACCACCCCCTAAAACCCCCTCCTTCC49362.368408425699343No Hit
ACCCCACTCCAACTATCCAAAAAAAAAAACTCTAAAAATAAAAAAAAAAT46222.2177438702557457No Hit
ACCCCACTCCAACTATCCAAAAAAAAAACTCTAAAAATAAAAAAAAAATA28741.379012523391392No Hit
ACCCCACTCCAACTATCCAAAAAAAAAAACTCTAAAAATAAAAAAAAATA18730.8987092749868049No Hit
ACCCCACTCCAACTATCCAAAAAAAAAAAACTCTAAAAATAAAAAAAAAA13750.6597572093469604No Hit
CCTCTTTACATTTAATCAAAAACCCAAAAAATTAAACAAAACGTCTAAAA12300.5901828127249172No Hit
ACCCCACTCCAACTATCCAAAAAAAAAACTCTAAAAATAAAAAAAAATAA11920.5719495225756922No Hit
TCTCTTTACATTTAATCAAAAACCCAAAAATTAAACAAAACGTCTAAAAA10410.4994961854037714No Hit
ACCCCACTCCAACTATCCAAAAAAAAAAACTCTAAAAATAAAAAAAAAAA9200.44143755098123894No Hit
ACCCCACTCCAACTATCCAAAAAAAAACTCTAAAAATAAAAAAAAAATAA7760.37234297778417547No Hit
CAATTACAAAAATAAACTAAAATCCCAACACATCAAAAATACAATAATAC6000.2878940549877645No Hit
TCTCTTTACATTTAATCAAAAACCCAAAAAATTAAACAAAACATCTAAAA5540.26582217743870257No Hit
ACCCCACTCCAACTATCCAAAAAAAAAAAACTCTAAAAATAAAAAAAAAT5460.2619835900388657No Hit
TCTCTTTACATTTAATCAAAAACCCAAAAGATTAAACAAAACGTCTAAAA5410.25958447291396763No Hit
TCTCTTTACATTTAATCAAAAACCCAAAAAATTAAACAAAACTTCTAAAA5040.24183100618972217No Hit
ACCCCACTCCAACTATCCAAAAAAAAAACTCTAAAAATAAAAAAAAAAAT4400.2111223069910273No Hit
CCAAAAAACCAACAAAAAAACTAAATAAAACCGAAAACTTCTCCATCTTA3840.1842521951921693No Hit
CCCCCACTCCAACTATCCAAAAAAAAAAACTCTAAAAATAAAAAAAAAAT3740.1794539609423732No Hit
CCTCAAACTAATACACCACTACATACCACCCCCTAAAACCCCCTCCTTCC3720.178494314092414No Hit
ACCCCACTCCAACTATCCAAAAAAAAACTCTAAAAATAAAAAAAAATAAA3480.16697855189290342No Hit
ACCCCACTCCAACTATCCAAAAAAAAAAAAACTCTAAAAATAAAAAAAAA3470.1664987284679238No Hit
CTCTTTACATTTAATCAAAAACCCAAAAAATTAAACAAAACGTCTAAAAA3410.16361978791804616No Hit
CCAAAAAAACCAACAAAAAACTAAATAAAACCGAAAACTTCTCCATCTTA3280.15738208339331125No Hit
CACACACACAAAACTATAATAAATACCCTAAAAACACTCCGTAAAATTCA3160.15162420229355597No Hit
CAAAACTAACACACACTTATACCCCCGAAACAACCATAAATACACAAAAA2940.1410680869440046No Hit
CCCCCACTCCAACTATCCAAAAAAAAAACTCTAAAAATAAAAAAAAAATA2700.12955232474449402No Hit
CCAAAAAAACCAACAAAAAAACTAAATAAAACCGAAAACTTCTCCACCTT2400.1151576219951058No Hit
CACACACACAAAACTATAATAAATACCTTAAAAAACACTCCGTAAAATTC2250.10796027062041169No Hit
TCTCTTTACATTTAATCAAAAACCCAAAAAAATTAAACAAAACGTCTAAA2190.10508133007053405No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)