FastQCFastQC Report
Sun 4 Sep 2022
EGAF00000888259

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000888259
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences247914
Sequences flagged as poor quality0
Sequence length301
%GC32

[FAIL]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TAATCTAAACCTCCTAACCTCAAACGATCTATCTACTTCTACCTCCGCCT230649.303226118734722No Hit
ACTCCCACACACACTAACACAATAAAACAACGCTACGAACATCAATACAC185507.482433424493978No Hit
CCATAAAAACAAAAACCTAAAAAAAACTAAAACACCTATTAACCTATCCC166606.72007228313044No Hit
ACTCTAAAAAACCAACTCCTCCAAACAAAAACTCCTAAAACCTCAACAAA141045.68906959671499No Hit
ACTCCCTTTTCCCTTTAACTTTATTATATATCCCTCTAAAAATTTCTAAA130755.2740063086392865No Hit
CCCCTAATAAAAACTTCCTTCCACTAACCACGAACATTAAAACCTTCATC129045.205030776801633No Hit
ACCCCCAAAAAAACCTACTCATAAACGCTTAAAACCCCCACCACCCGCAA106534.297054623780827No Hit
AAAACAAAAAAAACTCCTAATCCCTATAACCTCAAAACGACCATCAAACA102124.119170357462668No Hit
AAAAAAATCCTTCCAACCAATAAAAACAATAACTAACCAAATAAATAACT80963.2656485716821155No Hit
CCAACATATACAAACACAAAATACTCAACAACTACCTACACAAACAAACC76603.0897811337802623No Hit
CACCCAAAATACCTCAACTACCTTACTCTAAACTAACCCCATTAACTCCC67342.716264511080455No Hit
AAACTACAAAATCAAAACCAACCCAAAACCACGCCAAACCCCCACAAAAC66672.6892390103019594No Hit
CAAAAAAACAACCTTCTCTCAATAAAAAAAAACAAAAACACCTAACGCTA57862.3338738433489032No Hit
AAACTACAAAATCAAAACCAACCCAAAACCACACCAAACCCCCACAAAAC56802.2911170809232235No Hit
CCCATAAACACCCTATAAACTAACATCACTAAACACGACTTAACTATATC47681.9232475777890718No Hit
TACCACCTAAATCTCCAACTTCTCCGAAAAAACCAACTATCCTAATAAAA28231.1387013238461723No Hit
AAACACAAACCTATCTCTTATCCCCTACACCCAAAAAAAAAACGACACAA18980.7655880668296264No Hit
AAACTACAAAATCAAAACCAACCCCATACAACTCCCTAATACCTTGTAGA16540.6671668401139105No Hit
CCTCCCACACACACTAACACAATAAAACAACGCTACGAACATCAATACAC15070.6078720846745242No Hit
CCTCTAAAAAACCAACTCCTCCAAACAAAAACTCCTAAAACCTCAACAAA12010.4844421855966181No Hit
CCTCCCTTTTCCCTTTAACTTTATTATATATCCCTCTAAAAATTTCTAAA10820.4364416692885436No Hit
AAACACAAACCTATCTCTTATCCCCTACACCCAAAAAAAAAAACGACACA10690.4311979154061489No Hit
CCATAAAAACAAAAACCTAAAAAAACTAAAACACCTATTAACCTATCCCG10270.41425655670918143No Hit
CAATCTAAACCTCCTAACCTCAAACGATCTATCTACTTCTACCTCCGCCT9840.3969118323289528No Hit
CCCCCCAAAAAAACCTACTCATAAACGCTTAAAACCCCCACCACCCGCAA9310.37553345111611286No Hit
CAAAAAAACAACCTTCTCTCAATAAAAAAAACAAAAACACCTAACGCTAA8880.3581887267358842No Hit
AAACACAAACCTATCTCTTATCCCCTACACCCAAAAAAAAACGACACAAA7930.3198689868260768No Hit
TAATCTAAACCTCCTAACCTCAAACGACCTATCTACTTCTACCTCCGCCT6010.24242277563993964No Hit
TAATCTAAACCTCCTAACCTCAAACTATCTATCTACTTCTACCTCCGCCT5390.21741410327774952No Hit
CAAAAAAACAACCTTCTCTCAATAAAAAAAAAACAAAAACACCTAACGCT5300.21378381212839936No Hit
TAAAACTAAACCCCACATACCTTCCAAATCATAAAACACAACCAATTCCT5020.20248957299708767No Hit
CACTCCATTATTCTTATCTTTAATCTCTTTTTATTTATAAAAATCCAATT4950.1996660132142598No Hit
ACTCTAAAAAACCAACTCCTCCAAACAAAAACCCCTAAAACCTCAACAAA4330.17465734085206966No Hit
AAAACAAAAAAACTCCTAATCCCTATAACCTCAAAACGACCATCAAACAA3980.1605395419379301No Hit
AAAACCCCACTCTATCTTACAACCTAAATATCCCCTGTAGAACCATGTCG3960.1597328105714078No Hit
ACTCCCACACACACTAACACAATAAACAACGCTACGAACATCAATACACT3880.1565058851053188No Hit
AAAAAAATCCTTCCAACCAATAAAACTAACAATACCTACCCAACATGTAG3820.154085691005752No Hit
CCATAAAAACAAAAACCTAAAAAAAAACTAAAACACCTATTAACCTATCC3720.15005203417314067No Hit
CAAACAAAAAAAACTCCTAATCCCTATAACCTCAAAACGACCATCAAACA3700.14924530280661844No Hit
ACTCCCACACACACTAACACAATAAAACAACTCTACGAACATCAATACAC3430.1383544293585679No Hit
AAACACAAACCTATCTCTTATCCCCTACACCCAAAAAAAAAAAACGACAC3020.12181643634486153No Hit
CAACTACAAAATCAAAACCAACCCAAAACCACGCCAAACCCCCACAAAAC2850.11495921972942229No Hit
TAATCTAAACCTCCTAACCTCAAACGATCTATCTACTTCCACCTCCGCCT2760.11132892858007211No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)