FastQCFastQC Report
Fri 2 Sep 2022
EGAF00000888336

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000888336
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences224249
Sequences flagged as poor quality0
Sequence length151
%GC36

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGATTGGGATAAAGGAGTATTATTTTCGGTTTTTGTTTGAGTGATTTC162647.252652185739959No Hit
TTGTGGGGATTTAGGTTGTATTATGCGGATGAGGTTTTTAGGTAGTAGGT139566.2234391234743525No Hit
TGGGGAGGGAAGAGTAGATTTTACGATATTTTTGGGGTTTTTAGATAGTT122925.48140682901596No Hit
GTTGGGATTTTAGTTTATTTTTGTAATTTAAATATTTTTTAGTAAAGTTT117045.219198301887634No Hit
TTGGTGGGGAGGTTTTGATAGGTTTTGGGTTTGGGTTTAGGACGGTGAGG116455.192888262600948No Hit
GGTAGGAGGGGTTGTATAAGGTTTATTTGGAAGTTAGAATTTATTTGTGG112965.037257691227163No Hit
GTAAGGTTTGGGGTTATTTTAGTGGAGTCGGAGGTGTTACGTTTTGTTGT110824.941828057204269No Hit
GTTTAGGATTGGATTGAGGATTAAATTTTTTAAGGTATTTTTTTAAAGAG87093.883629358436381No Hit
TGTGTGTGTGAATTTAAAAGTGTGATAATAAATATTATTTTTATTAGTTG85733.822982488216224No Hit
GGTTGGAGTTTTAGGTGTATTTGGGCGTAGGTTTTTTTGAGGAAATTAAG83243.7119452037690244No Hit
TGGGTTTTAGATATTTGTTTTTTTTGGTCGGTTTGTTTTTAATTTTTTAG74263.3114974871682814No Hit
GGGAGGTAAGAGAGTGTGGATAGTATAGAAATAGTGTGGGGTTGTGGTGG66132.948954064455137No Hit
GGAAGTTAGGTTTTTAGGAGTGTGGTCGGGTGGGGAGTAGGAGAAGGGTT65582.924427756645515No Hit
GATATTTGAAAGGAGGATTGAATGATATGAGGGAGTGGGTCGGAAGGGAG50332.244380131015077No Hit
TTGAGGTTATTAGAAGGGAGGTTTTAGTTATATAGGGTGGAAGAATTTAA45522.029886420898198No Hit
GGAGGAGGGTTTAGTAGGTGGTTTTGAGTATTGTTTTGGGTTTTAGTTTT41041.8301084954670925No Hit
GGGAGGTAAGAGAGTGTGGATAGTATAGAAATAGTGTGGGGTTGCGGTGG30221.347609130921431No Hit
GGAGGAGGGTTTAGTAGGTGGCGAGGGGAAGGAGGGGGTTTTAGGGGGCG28341.2637737514994494No Hit
TTTGGTTGGTTTTTTGTGTTTGTGTTATGTGTTACGGAGGAGAGGGGTTT24731.1027919856944737No Hit
GTTTTATTGGGTTAATGAGAAGGGAGGTTGGTAGGGTTGAGCGTTAGGTT17290.7710179309606732No Hit
GTTTTATTGGGTTAATGAGAAGGGAGGTCGGTAGGGTTGAGTGTTAGGTT14850.6622103108598032No Hit
GTTTTATTGGGTTAATGAGAAGGGAGGTCGGTAGGGTTGAGCGTTAGGTT10380.4628783182979634No Hit
GTTTAGGATTGGATTGAGGATTAAATTTTTCAAGGTATTTTTTTAAAGAG9260.412933836940187No Hit
ATTATTTTTTTAGGGAGTTGGGTTGTATTTTATTTGTTGTTTTGTTTTTA6600.29431569371546806No Hit
TGGGTTTTAGATATTTGTTTTTTTGGTCGGTTTGTTTTTAATTTTTTAGG3780.16856262458249535No Hit
GGGGATTGGGATAAAGGAGTATTATCTTCGGTTTTTGTTTGAGTGATTTC3300.14715784685773403No Hit
GGAAGTTAGGTTTTTAGGAGTGTGGTACGGTAGGGAGGGGATAGGAGAAG3180.1418066524265437No Hit
GTTTAGGATTGGATTGAGGATTAAATTTTTTAAGGTATTTTTTCAAAGAG2590.11549661313985791No Hit
GTTTAGGATTGGATTGAGGATTAAATTTTTTAAGGTATTTTTTAAAGAGT2580.11505068027059208No Hit
TTTGGTTGGTTTTTTGTGTTTGTGTTATGTGTTACGGTGGAGAGGGGTTT2440.10880762010087003No Hit
GTTGGGATTTTAGTTTATTTTTGTAATTTAAATATTTTTTAGTAATGTTT2380.10613202288527485No Hit
TGGGTTTTAGATATTTGTTTTTTTTGTCGGTTTGTTTTTAATTTTTTAGG2290.1021186270618821No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)