FastQCFastQC Report
Sat 3 Sep 2022
EGAF00000888343

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000888343
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences299882
Sequences flagged as poor quality0
Sequence length151
%GC35

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTAAAACAAACTAATACCACCCACTAAACGAAAACGAAACCCTAAAAAA150575.020974916800608No Hit
CTCCAAACTACAAAAAACTCCTTCAAATCACCTATCCACCTCCTAAAACA136964.567129737696828No Hit
CCAAAACTCAACAACCTAAACCCCGAAAATAACTACTAAACTACCTACCG127484.251005395455546No Hit
CCAAAAAAACCAACAAAAAAACTAAATAAAACCGAAAACTTCTCCATCTT119163.9735629347543364No Hit
ACACTCTAAAATTTCCCCTAAAAAACTAATTCAAACCATAACGAAAAATA100793.360988655537845No Hit
ACCAAACAACCAAACTAAACAACGCTAAAAACGAAAAACCCAAATATCCT95203.17458200225422No Hit
AAAATTAACCTAAAAATCCCCACAACCTTAACTCTACCTATATTCCCACA93583.1205607538965325No Hit
AAAATTTAATCCTCAATCCAATCCTAAACCACCAACATCCTCTATTAATC91643.0558686416657217No Hit
AATCTAAAAACCTCCTCTCCAAAACTAAATCTTACACACCCCCAAAATTA90263.009850541212877No Hit
TCCCTAATCTCAAAAAACATAAACTAACTCTAAAACCAAAAATTTCGATT88422.9484930739424176No Hit
ATATAATACCCACCTTCCAAACCACGAACCCGCAACCCAATCCTAAAAAC86902.8978064705450812No Hit
TCTCTTTACATTTAATCAAAAACCCAAAAAATTAAACAAAACGTCTAAAA85032.835448609786516No Hit
TAAAACTCACTACTATCCCCCACAAACTAAAACTAAAAAACAAACTCTAA80012.6680494327768924No Hit
CACAAAACACCTAAATTATACCCAAAAAAACTAATCCCGCCGAATATCTA75812.5279943444421473No Hit
CCCAAAATCCTAAAATTCTCCTAACCACAAAAACTCCCCACAAAAACAAA69752.3259148598448722No Hit
AACCCAATCTAAAACCAAAAACCTACGCATCCAATATAAAAAAAACAACT66322.2115365377048306No Hit
AACTTCTCCTATCCCCTCCCTACCCCCATACCTCAAATTTCTCCCTCCAT61392.047138541159523No Hit
ACAAACCAACCTAAATTAAAATCCCAACTCCTTAATAACCGTCCTAACCT58461.9494334438212364No Hit
AACCTTTATTTAATCAAAACTACTTAATTCAAAAAATATCCACGTTACTC51801.727346089461855No Hit
CCACCTAAACTCCTATAAAAAAATCACCCAACTACCGAAACCCATTCGAA50951.699001607298871No Hit
CTATTAACCCCCTCCCTAAACAATCACCGTTTATATTATTTATTTCCTAA44571.4862512588284726No Hit
AACCTTTATTTAATCAAAACTACTTAATTCAAAAAATATCCACATTACTC43891.4635756730980851No Hit
CCCAAAATCCTAAAATTCTCCTAACCGCAAAAACTCCCCACAAAAACAAA27050.9020214617749649No Hit
ACACTCTAAAATTTCCCCTAAAAAACTAATTCAAACCATAACAAAAAATA24390.8133199058296262No Hit
ATATAATACCCACCTTCCAAACCACAAACCCGCAACCCAATCCTAAAAAC19020.6342494714587738No Hit
ACAAACCAACCTAAATTAAAATCCCAACTCCTTAATAACCATCCTAACCT17530.5845632615495427No Hit
CACAAAACACCTAAATTATACCCAAAAAAACTAATCCCACCGAATATCTA16190.5398790190808385No Hit
CACAAAACACCTAAATTATACCCAAAAAAACTAATCCCGCCAAATATCTA13790.45984754003241274No Hit
AAAAACTAACACACACTTATACCCCCGAAACAACCATAAATACACAAAAA13690.45651289507206166No Hit
TCTCTTTACATTTAATCAAAAACCCAAAAAATTAAACAAAACATCTAAAA12990.43317038034960414No Hit
AACCCAATCTAAAACCAAAAACCTACACATCCAATATAAAAAAAACAACT11840.3948219633055669No Hit
CTATTAACCCCCTCCCTAAACAATCACCATTTATATTATTTATTTCCTAA11450.3818168479601977No Hit
ACCAAACAACCAAACTAAACAACGCTAAAAACAAAAAACCCAAATATCCT11290.376481416023636No Hit
AACTTCTCCTATCCCCTCCCTACCCCCGTACCTCAAATTTCTCCCTCCAT10980.36614401664654767No Hit
ACCAAACAACCAAACTAAACAACACTAAAAACGAAAAACCCAAATATCCT10730.35780740424567No Hit
CCTAAAACAAACTAATACCACCCACTAAACAAAAACGAAACCCTAAAAAA8220.2741078157408581No Hit
CCACTCTAAAATTTCCCCTAAAAAACTAATTCAAACCATAACGAAAAATA8090.2697727772924017No Hit
AATCTAAAACCCTCCTCTCCAAAACTAAATCTTACACACCCCCAAAATTA6890.2297570377681888No Hit
CCAAAAAAACCAACAAAAAAACTAAATAAAACCAAAAACTTCTCCATCTT6770.22575546381576753No Hit
CCCAAACAACCAAACTAAACAACGCTAAAAACGAAAAACCCAAATATCCT6110.20374680707745044No Hit
AATCTAAAAATCTCCTCTCCAAAACTAAATCTTACACACCCCCAAAATTA5410.18040429235499297No Hit
CCAAACCAACCTAAATTAAAATCCCAACTCCTTAATAACCGTCCTAACCT4920.1640645320492727No Hit
AAAATTTAATCCTCAATCCAATCCTAAACCACCAACATCCTCTACTAATC4780.1593960291047812No Hit
AACCCAATCTAAAACCAAAAACCTAAAAACCATTAATAATTCCTCCCTTT4770.1590625646087461No Hit
CCACCTAAACTCCTATAAAAAAATCACCCAACTACCAAAACCCATTCAAA4620.1540605971682195No Hit
CCCCTAATCTCAAAAAACATAAACTAACTCTAAAACCAAAAATTTCGATT4360.14539052027130672No Hit
TCTCTTTACATTTAATCAAAAACCCAAAAAATTAAACAAAACTTCTAAAA4330.1443901267832014No Hit
CCACCTAAACTCCTATAAAAAAATCACCCAACTACCGAAACCCATTCAAA4290.14305626879906097No Hit
CCCAAAATCCTAAAATTCTCCTAACCACAAAAAGTCCCCACAAAAACAAA3990.13305233391800775No Hit
CCTCTTTACATTTAATCAAAAACCCAAAAAATTAAACAAAACGTCTAAAA3960.13205194042990243No Hit
AAAATTTAATCCTCAATCCAATCCTAAACCACCTACATCCTCTATTAATC3810.12704997298937584No Hit
ACCAAACAACCAAACTAAACAACACTAAAAACGAAAAACCCAAATATCCC3720.12404879252505985No Hit
CACAAAACACCTAAATTATACCCAAAAAAACTAATCCCACCAAATATCTA3670.12238147004488431No Hit
AACCCAATCTAAAACCAAAAACCTACGCATCCAATATAAAAAAACAACTT3270.10904289020348004No Hit
CTATAATACCCACCTTCCAAACCACGAACCCGCAACCCAATCCTAAAAAC3100.10337399377088322No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)