FastQCFastQC Report
Fri 2 Sep 2022
EGAF00000888344

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000888344
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences201896
Sequences flagged as poor quality0
Sequence length151
%GC35

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGGGAGGGAAGAGTAGATTTTACGATATTTTTGGGGTTTTTAGATAGTT157227.787177556761897No Hit
TTGTGGGGATTTAGGTTGTATTATGCGGATGAGGTTTTTAGGTAGTAGGT157157.783710425169395No Hit
TGTGTGTGTGAATTTAAAAGTGTGATAATAAATATTATTTTTATTAGTTG153457.600447755279946No Hit
GTTTAGGATTGGATTGAGGATTAAATTTTTTAAGGTATTTTTTTAAAGAG148367.348337758053651No Hit
GTAAGGTTTGGGGTTATTTTAGTGGAGTCGGAGGTGTTACGTTTTGTTGT147517.306236874430399No Hit
TTGAGGTTATTAGAAGGGAGGTTTTAGTTATATAGGGTGGAAGAATTTAA147247.292863652573603No Hit
GGGAGGTAAGAGAGTGTGGATAGTATAGAAATAGTGTGGGGTCGCGGTGG133076.591017157348338No Hit
GTTGGGATTTTAGTTTATTTTTGTAATTTAAATATTTTTTAGTAAAGTTC93534.6325831120973175No Hit
GTTGGGATTTTAGTTTATTTTTGTAATTTAAATATTTTTTAGTAGAGTTC70943.513690216745255No Hit
GGAGGAGGGTTTAGTAGGTGGCGAGGGGAAGGAGGGGGTTTTAGGGGGCG62853.112988865554543No Hit
GTTTTATTGGGTTAATGAGAAGGGAGGTCGGTAGGGTTGAGCGTTAGGTT53272.638487141894837No Hit
TTGGTGGGGAGGTTTTGATAGGGGGTGTGTTTTTTTTTGTTTTTAAGGGA39111.9371359511827873No Hit
GGAAGTTAGGTTTTTAGGAGTGTGGGGAAGAATTTGTGTTTAGAAGAGTT35641.7652652850972779No Hit
GGAAGTTAGGTTTTTAGGAGTGTGGGGTTAATTTAGGTTTTTTTTGTTTT14120.6993699726591909No Hit
GTTGGGATTTTAGTTTATTTTTGTAATTTAAATATTTTTTAGTAAAGTTT12700.6290367317827No Hit
TTGGTGGGGAGGTTTTGATACCAAGTCTCTGCTACCGTATGGTGGGGTTT11700.5795062804612275No Hit
TTGGTGGGGAGGTTTTGATAGGGGGTGTGTTTTTTTTGTTTTTAAGGGAT11460.5676189721440742No Hit
GGAAGTTAGGTTTTTAGGAGTGTGGGGGGCGGGGAGGGGCGTGTGTGTAG11310.5601894044458533No Hit
GGAGGAGGGTTTAGTAGGTGGGGTAGTTTGTTCGGGGCGTTGATTTATTA10820.5359194832983318No Hit
GGAGGAGGGTTTAGTAGGTGGGTAGGTTTTTGGTTTTAGATTGGGTTAGA4310.21347624519554623No Hit
TTGGTGGGGAGGTTTTGATAGGGGGTGTGTTTTTTTTTTGTTTTTAAGGG4200.20802789555018428No Hit
GTTTAGGATTGGATTGAGGATTAAATTTTTTAAGGTATTTTTTAAAGAGT4120.20406545944446647No Hit
GGTTGGAGTTTTAGGTGTATTTGGGCGTAGGTTTTTTTGAGGAAATTAAG2860.1416570907794112No Hit
GGAAGTTAGGTTTTTAGGAGTGTGGCGCGTATTAGAGGAGATGTGTTTAT2690.13323691405476087No Hit
GGGAGGTAAGAGAGTGTGGATAGTATAGAAATAGTGTGGGGTCACGGTGG2470.12234021476403693No Hit
TTGAGGTTATTAGAAGGGAGGTTTTAGTTATATAGGGGGGAAGAATTTAA2440.12085430122439275No Hit
GGTAGGAGGGGTTGTATAAGGTTTTGGAGAGGAGGTTTTTAGATTAGACC2230.11045290644688353No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)