FastQCFastQC Report
Sat 3 Sep 2022
EGAF00000888397

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000888397
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences270384
Sequences flagged as poor quality0
Sequence length151
%GC34

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCAAAAAAACCAACAAAAAAACTAAATAAAACCGAAAACTTCTCCATCTT122604.53429196993905No Hit
CCTAAAACAAACTAATACCACCCACTAAACGAAAACGAAACCCTAAAAAA120974.47400733771229No Hit
AAAATTAACCTAAAAATCCCCACAACCTTAACTCTACCTATATTCCCACA106533.939952068169714No Hit
TAAAACTCACTACTATCCCCCACAAACTAAAACTAAAAAACAAACTCTAA99013.661829102313746No Hit
AAAATTTAATCCTCAATCCAATCCTAAACCACCAACATCCTCTATTAATC87753.2453843422687734No Hit
ACCAAACAACCAAACTAAACAACGCTAAAAACGAAAAACCCAAATATCCT86593.202482395408012No Hit
TCTCTTTACATTTAATCAAAAACCCAAAAAATTAAACAAAACGTCTAAAA84533.1262944552932126No Hit
CCCAAAATCCTAAAATTCTCCTAACCACAAAAACTCCCCACAAAAACAAA83863.1015148825374284No Hit
CCAAAACTCAACAACCTAAACCCCGAAAATAACTACTAAACTACCTACCG81213.003506124622759No Hit
CTCCAAACTACAAAAAACTCCTTCAAATCACCTATCCACCTCCTAAAACA79182.9284277176164273No Hit
AATCTAAAAACCTCCTCTCCAAAACTAAATCTTACACACCCCCAAAATTA78612.907346588555536No Hit
CACAAAACACCTAAATTATACCCAAAAAAACTAATCCCGCCGAATATCTA74602.759038996390319No Hit
ACAAACCAACCTAAATTAAAATCCCAACTCCTTAATAACCGTCCTAACCT72842.693946387360199No Hit
AACCTTTATTTAATCAAAACTACTTAATTCAAAAAATATCCACGTTACTC71042.6273744008521214No Hit
ATATAATACCCACCTTCCAAACCACAAACCCGCAACCCAATCCTAAAAAC70682.614060003550506No Hit
CTATTAACCCCCTCCCTAAACAATCACCGTTTATATTATTTATTTCCTAA60792.2482839221255695No Hit
TCCCTAATCTCAAAAAACATAAACTAACTCTAAAACCAAAAATTTCGATT59152.1876294455293213No Hit
ACACTCTAAAATTTCCCCTAAAAAACTAATTCAAACCATAACGAAAAATA57212.1158796378483933No Hit
ATATAATACCCACCTTCCAAACCACGAACCCGCAACCCAATCCTAAAAAC46541.7212556956032903No Hit
AACTTCTCCTATCCCCTCCCTACCCCCATACCTCAAATTTCTCCCTCCAT46151.7068317651932068No Hit
AACCTTTATTTAATCAAAACTACTTAATTCAAAAAATATCCACATTACTC37721.3950529617137108No Hit
AACCCAATCTAAAACCAAAAACCTACACATCCAATATAAAAAAAACAACT33551.2408278596366649No Hit
TCTCTTTACATTTAATCAAAAACCCAAAAAATTAAACAAAACATCTAAAA26950.9967305757737145No Hit
ACACTCTAAAATTTCCCCTAAAAAACTAATTCAAACCATAACAAAAAATA24720.9142552813775964No Hit
CACAAAACACCTAAATTATACCCAAAAAAACTAATCCCGCCAAATATCTA23610.8732025563642819No Hit
CCACCTAAACTCCTATAAAAAAATCACCCAACTACCGAAACCCATTCGAA22370.8273418545476063No Hit
CCACCTAAACTCCTATAAAAAAATCACCCAACTACCAAAACCCATTCGAA19480.7204568317651933No Hit
AACCCAATCTAAAACCAAAAACCTACGCATCCAATATAAAAAAAACAACT19000.7027043020297059No Hit
CCAAAACTCAACAACCTAAACCCCGAAAATAACCACTAAACTACCTACCG17520.6479673353452867No Hit
AAAAACTAACACACACTTATACCCCCGAAACAACCATAAATACACAAAAA14300.528877448369726No Hit
CCTAAAACAAACTAATACCACCCACTAAACAAAAACGAAACCCTAAAAAA11540.426800402390674No Hit
CCCAAAATCCTAAAATTCTCCTAACCGCAAAAACTCCCCACAAAAACAAA9650.3568998165571927No Hit
CTATTAACCCCCTCCCTAAACAATCACCACTTATATTATTTATTTCCTAA8000.2958754955914551No Hit
CCAAACCAACCTAAATTAAAATCCCAACTCCTTAATAACCGTCCTAACCT7100.2625895023374164No Hit
CCCAAACAACCAAACTAAACAACGCTAAAAACGAAAAACCCAAATATCCT7020.2596307473815018No Hit
ACCAAACAACCAAACTAAACAACGCTAAAAACGAAAAACCCAAATATCCC6190.2289336647138884No Hit
AACTTCTCCTATCCCCTCCCTACCCCCGTACCTCAAATTTCTCCCTCCAT5840.21598911178176222No Hit
CCACTCTAAAATTTCCCCTAAAAAACTAATTCAAACCATAACGAAAAATA5500.20341440321912538No Hit
CCTCTTTACATTTAATCAAAAACCCAAAAAATTAAACAAAACGTCTAAAA5450.20156518137167878No Hit
ACACTCTAAAATTTCCCCTAAAAAACTAATTCAAACCATGACGGGAAGTG4910.18159358541925558No Hit
AATCTAAAAATCTCCTCTCCAAAACTAAATCTTACACACCCCCAAAATTA4330.16014261198887508No Hit
TCTCTTTACATTTAATCAAAAACCCAAAAAATTAAACAAAACTTCTAAAA4300.1590330788804071No Hit
CAAAACTCACTACTATCCCCCACAAACTAAAACTAAAAAACAAACTCTAA4210.15570447955500327No Hit
CCCCTAATCTCAAAAAACATAAACTAACTCTAAAACCAAAAATTTCGATT4140.15311556896857803No Hit
CAAATTAACCTAAAAATCCCCACAACCTTAACTCTACCTATATTCCCACA3980.1471980590567489No Hit
TCTCTTTACATTTAATCAAAAACCCAAAAAATTAAACAAGACGTCTAAAA3550.1312947511687082No Hit
ACCAAACAACCAAACTAAACAACGCTAAAAACGAAAAACCCAAATATCGT3300.12204864193147524No Hit
CAAATTTAATCCTCAATCCAATCCTAAACCACCAACATCCTCTATTAATC2880.10651517841292384No Hit
CTATAATACCCACCTTCCAAACCACAAACCCGCAACCCAATCCTAAAAAC2840.10503580093496657No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)