FastQCFastQC Report
Sat 3 Sep 2022
EGAF00000888403

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000888403
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences285616
Sequences flagged as poor quality0
Sequence length151
%GC34

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATATAATACCCACCTTCCAAACCACGAACCCGCAACCCAATCCTAAAAAC121864.266567699288555No Hit
AAAATTAACCTAAAAATCCCCACAACCTTAACTCTACCTATATTCCCACA111933.9188981009467256No Hit
TCTCTTTACATTTAATCAAAAACCCAAAAAATTAAACAAAACATCTAAAA107363.758893059212369No Hit
CCAAAACTCAACAACCTAAACCCCGAAAATAACTACTAAACTACCTACCG105573.696221500196067No Hit
ACCAAACAACCAAACTAAACAACGCTAAAAACGAAAAACCCAAATATCCT102923.6034395832166264No Hit
CTCCAAACTACAAAAAACTCCTTCAAATCACCTATCCACCTCCTAAAACA96843.39056635482606No Hit
CCCAAAATCCTAAAATTCTCCTAACCACAAAAACTCCCCACAAAAACAAA92453.2368634810374766No Hit
AAAATTTAATCCTCAATCCAATCCTAAACCACCAACATCCTCTATTAATC87283.055851212817209No Hit
CCTAAAACAAACTAATACCACCCACTAAACGAAAACGAAACCCTAAAAAA84932.973572909080724No Hit
ACAAACCAACCTAAATTAAAATCCCAACTCCTTAATAACCGTCCTAACCT82232.8790403898941235No Hit
AATCTAAAAACCTCCTCTCCAAAACTAAATCTTACACACCCCCAAAATTA77142.7008290852053105No Hit
CCAAAAAAACCAACAAAAAAACTAAATAAAACCAAAAACTTCTCCATCTT73542.5747857262898437No Hit
AACCTTTATTTAATCAAAACTACTTAATTCAAAAAATATCCACGTTACTC72212.528219707579407No Hit
TAAAACTCACTACTATCCCCCACAAACTAAAACTAAAAAACAAACTCTAA71582.5061621197692006No Hit
ACACTCTAAAATTTCCCCTAAAAAACTAATTCAAACCATAACGAAAAATA70412.465198028121674No Hit
TCCCTAATCTCAAAAAACATAAACTAACTCTAAAACCAAAAATTTCGATT69282.4256344182398744No Hit
CCAAAAAAACCAACAAAAAAACTAAATAAAACCGAAAACTTCTCCATCTT66202.3177973222788637No Hit
AACTTCTCCTATCCCCTCCCTACCCCCATACCTCAAATTTCTCCCTCCAT47511.6634222172427315No Hit
CCTAAAACAAACTAATACCACCCACTAAACGAAAACGAAACCCCGAAAAA44771.567489216290404No Hit
CCACCTAAACTCCTATAAAAAAATCACCCAACTACCGAAACCCATTCGAA42951.5037672959498067No Hit
AACCTTTATTTAATCAAAACTACTTAATTCAAAAAATATCCACATTACTC42041.4719063357795081No Hit
AACCCAATCTAAAACCAAAAACCTACGCATCCAATATAAAAAAAACAACT39941.398381043078819No Hit
CTATTAACCCCCTCCCTAAACAATCACCGTTTATATTATTTATTTCCTAA37961.3290571956753123No Hit
CACAAAACACCTAAATTATACCCAAAAAAACTAATCCCGCCGAATATCTA34871.2208699792728699No Hit
CACAAAACACCTAAATTATACCCAAAAAAACTAATCCCACCAAATATCTA31701.1098817993389727No Hit
ACACTCTAAAATTTCCCCTAAAAAACTAATTCAAACCATAACAAAAAATA30181.0566634922413312No Hit
CTATTAACCCCCTCCCTAAACAATCACCATTTATATTATTTATTTCCTAA28240.9887401266035517No Hit
CCCAAAATCCTAAAATTCTCCTAACCGCAAAAACTCCCCACAAAAACAAA19570.6851857038821354No Hit
CACAAAACACCTAAATTATACCCAAAAAAACTAATCCCGCCAAATATCTA18270.6396700464959947No Hit
AACCCAATCTAAAACCAAAAACCTACACATCCAATATAAAAAAAACAACT13270.4646098257800683No Hit
AAAAACTAACACACACTTATACCCCCGAAACAACCATAAATACACAAAAA12600.44115175620413427No Hit
ACAAACCAACCTAAATTAAAATCCCAACTCCTTAATAACCATCCTAACCT12490.43730043134838387No Hit
AACTTCTCCTATCCCCTCCCTACCCCCGTACCTCAAATTTCTCCCTCCAT9740.34101730995462437No Hit
CCAAAAAAACCAACAAAAAAACTAAATAAAACCGAAAACTTCTCCATCCT9000.3151083972886673No Hit
CCCAAACAACCAAACTAAACAACGCTAAAAACGAAAAACCCAAATATCCT6690.23423057531790936No Hit
TCTCTTTACATTTAATCAAAAACCCAAAAAATTAAACAAAACGTCTAAAA6380.22337684163352195No Hit
CCAAAAAAACCAACAAAAAAACTAACAAAAAAACCAACAAAAAAACCAAC6290.22022575766063526No Hit
CCAAACCAACCTAAATTAAAATCCCAACTCCTTAATAACCGTCCTAACCT5870.20552069912049745No Hit
CCTCTTTACATTTAATCAAAAACCCAAAAAATTAAACAAAACATCTAAAA5750.2013192538233152No Hit
CCACTCTAAAATTTCCCCTAAAAAACTAATTCAAACCATAACGAAAAATA5650.1978180494089967No Hit
TCTCTTTACATTTAATCAAAAACCCAAAAAATTAAGCAAAACATCTAAAA4190.1467004649599462No Hit
AATCTAAAAATCTCCTCTCCAAAACTAAATCTTACACACCCCCAAAATTA4120.14424962186992324No Hit
AATCTAAAACCCTCCTCTCCAAAACTAAATCTTACACACCCCCAAAATTA3790.1326956473026721No Hit
CTATAATACCCACCTTCCAAACCACGAACCCGCAACCCAATCCTAAAAAC3690.12919444288835358No Hit
CCCCTAATCTCAAAAAACATAAACTAACTCTAAAACCAAAAATTTCGATT3640.12744384068119433No Hit
ATATAATACCCACCTTCCAAACCACGAACCCGCAACCCAATCCTAAAACC3550.12429275670830767No Hit
CAAATTAACCTAAAAATCCCCACAACCTTAACTCTACCTATATTCCCACA3340.11694022743823876No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)