FastQCFastQC Report
Sat 3 Sep 2022
EGAF00000888404

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000888404
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences248683
Sequences flagged as poor quality0
Sequence length151
%GC36

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGATTGGGATAAAGGAGTATTATTTTCGGTTTTTGTTTGAGTGATTTC130395.243221289754426No Hit
GGGAGATTAAGTAGGTGAGTGGTTCGTTTCGAGTTTGGTTTTTTTTTATT115714.65291153798209No Hit
GTAAGGTTTGGGGTTATTTTAGTGGAGTCGGAGGTGTTACGTTTTGTTGT113934.581334469987896No Hit
TGGGGAGGGAAGAGTAGATTTTACGATATTTTTGGGGTTTTTAGATAGTT104794.213798289388499No Hit
GGGAGGTAAGAGAGTGTGGATAGTATAGAAATAGTGTGGGGTTGTGGTGG103434.159110192494059No Hit
TTGTGGGGATTTAGGTTGTATTATGCGGATGAGGTTTTTAGGTAGTAGGT101154.067427206523969No Hit
TGGGTTTTAGATATTTGTTTTTTTTGGTTGGTTTGTTTTTAATTTTTTAG96813.892907838493182No Hit
TTGGTGGGGAGGTTTTGATAGGTTTTGGGTTTGGGTTTAGGACGGTGAGG96743.8900930099765563No Hit
GGTTGGAGTTTTAGGTGTATTTGGGCGTAGGTTTTTTTGAGGAAATTAAG91853.6934571321722833No Hit
GGTAGGAGGGGTTGTATAAGGTTTATTTGGAAGTTAGAATTTATTTGTGG88413.5551284164981123No Hit
TGTGTGTGTGAATTTAAAAGTGTGATAATAAATATTATTTTTATTAGTTG87893.534218261803179No Hit
GTTTAGGATTGGATTGAGGATTAAATTTTTTAAGGTATTTTTTTAAAGAG77863.130893547206685No Hit
GGAAGGTATGTGGGGTTTAGTTTTAAGTTTGGTATCGTCGTTTTTTTTTA68912.770997615438128No Hit
GGAGGAGGGTTTAGTAGGTGGTTTTGAGTATTGTTTTGGGTTTTAGTTTT53902.167417957801699No Hit
GTTTTATTGGGTTAATGAGAAGGGAGGTTGGTAGGGTTGAGTGTTAGGTT41651.6748229673922224No Hit
TGTTTGTTTTGGGATTTTTTTTTATCGTTTAGTTTTATTGGGGTTTAGTA40511.6289814744071769No Hit
GGAAGTTAGGTTTTTAGGAGTGTGGTTGGGTGGGGAGTAGGAGAAGGGTT40231.6177221603406746No Hit
GTAAGGTTTGGGGTTATTTTAGTGGAGTTGGAGGTGTTACGTTTTGTTGT38651.5541874595368401No Hit
GATATTTGAAAGGAGGATTGAATGATATGAGGGAGTGGGTCGGAAGGGAG34481.386504103617859No Hit
GATATTTGAAAGGAGGATTGAATGATATGAGGGAGTGGGTTGGAAGGGAG33831.3603664102491928No Hit
GGAAGGTATGTGGGGTTTAGTTTTAAGTTTGGTATTGTCGTTTTTTTTTA30491.2260588781702007No Hit
TTTGGTTGGTTTTTTGTGTTTGTGTTATGTGTTACGGAGGAGAGGGGTTT25941.0430950245895376No Hit
GGAAGTTAGGTTTTTAGGAGTGTGGTCGGGTGGGGAGTAGGAGAAGGGTT19070.7668397116007125No Hit
GTTTTATTGGGTTAATGAGAAGGGAGGTCGGTAGGGTTGAGTGTTAGGTT15270.6140347349838952No Hit
GGGAGATTAAGTAGGTGAGTGGTTCGTTTCGAGTTTGGTTTTTTTTATTT14860.5975478822436595No Hit
GGAAGGTATGTGGGGTTTAGTTTTAAGTTTGGTATCGTCGTTTTTTTTTT14550.5850822130986035No Hit
GGGAGATTAAGTAGGTGAGTGGTTCGTTTCGAGTTTGGTTTTTTTTTTAT12450.5006373575998359No Hit
ATTATTTTTTTAGGGAGTTGGGTTGTATTTTATTTGTTGTTTTGTTTTTA9960.4005098860798688No Hit
GGAAGGTATGTGGGGTTTAGTTTTAAGTTTGGTATCGTCGTTTTTTTTAG9080.36512347044229No Hit
GGTTGGAGTTTTAGGTGTATTTGGGCGTAGGCTTTTTTGAGGAAATTAAG8860.3562768665328953No Hit
GTAAGGTTTGGGGTTATTTTAGTGGAGTCGGAGGTGTCACGTTTTGTTGT5600.22518628133004667No Hit
TGTTTGTTTTGGGATTTTTTTTATCGTTTAGTTTTATTGGGGTTTAGTAT5440.21875238757775967No Hit
GGTTGGAGTTTTAGGTGTATTTGGTGGGTTTCGTTGTAGTTGTTGTGGGG5140.20668883679222141No Hit
TGGGTTTTAGATATTTGTTTTTTTGGTTGGTTTGTTTTTAATTTTTTAGG4670.1877892738948782No Hit
GGAGGAGGGTTTAGTAGGTGGCGAGGGGAAGGAGGGGGTTTTAGGGGGTG4670.1877892738948782No Hit
GGGGATTGGGATAAAGGAGTATTATCTTCGGTTTTTGTTTGAGTGATTTC4630.18618080045680646No Hit
GGAAGGTATGTGGGGTTTAGTTTTAAGTTTGGTATTGTCGTTTTTTTTTT4440.17854055162596558No Hit
GGAAGGTATGTGGGGTTTAGTTTTAAGTTTGGTATTGTCGTTTTTTTTAG4090.16446640904283766No Hit
TTGAGGTTATTAGAAGGGAGGTTTTTAGAATTAAGTAGTTTTGATTAAAT3920.15763039693103267No Hit
GGTAGGAGGGGTTGTATAAGGTTTATTAGGAAGTTAGAATTTATTTGTGG3320.13350329535995625No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2960.11902703441731038No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)