FastQCFastQC Report
Thu 1 Sep 2022
EGAF00000888408

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000888408
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45944
Sequences flagged as poor quality0
Sequence length151
%GC33

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTGTGTGTGAATTTAAAAGTGTGATAATAAATATTATTTTTATTAGTTG1058023.028034128504267No Hit
GGGGATTGGGATAAAGGAGTATTATTTTCGGTTTTTGTTTGAGTGATTTC583012.68936096117012No Hit
TGGGTTTTAGATATTTGTTTTTTTTGGTCGGTTTGTTTTTAATTTTTTAG502410.93505136688142No Hit
TGGGGAGGGAAGAGTAGATTTTACGATATTTTTGGGGTTTTTAGATAGTT31856.9323524290440535No Hit
GGGAGATTAAGTAGGTGAGTGGTTCGTTTCGAGTTTGGTTTTTTTTTATT15693.415026989378374No Hit
TTGAGGTTATTAGAAGGGAGGTTTTAGTTATATAGGGTGGAAGAATTTAA10312.2440362180045272No Hit
TTGGTGGGGAGGTTTTGATAGGTTTTGGGTTTGGGTTTAGGACGGTGAGG9592.0873236984154624No Hit
ATTATTTTTTTAGGGAGTTGGGTTGTATTTTATTTGTTGTTTTGTTTTTA6191.3472923559115444No Hit
TGGGTTTTAGATATTTGTTTTTTTTGGTTGGTTTGTTTTTAATTTTTTAG5941.2928782866097859No Hit
GTTGGGATTTTAGTTTATTTTTGTAATTTAAATATTTTTTAGTAAAGTTT5291.1514017064252133No Hit
GGAAGGTATGTGGGGTTTAGTTTTAAGTTTGGTATCGTCGTTTTTTTTTA4010.8728016716002089No Hit
TGGGTTTTAGATATTTGTTTTTTTGGTCGGTTTGTTTTTAATTTTTTAGG2930.6377328922166114No Hit
GGGGATTGGGATAAAGGAGTATTATCTTCGGTTTTTGTTTGAGTGATTTC2220.48319693539961694No Hit
GGGAGATTAAGTAGGTGAGTGGTTCGTTTCGAGTTTGGTTTTTTTTATTT2190.4766672470834059No Hit
GGTAGGAGGGGTTGTATAAGGTTTATTTGGAAGTTAGAATTTATTTGTGG2100.4570781821347728No Hit
GTTGGGATTTTAGTTTATTTTTGTAATTTAAATATTTTTTAGTAAAGTTC1930.4200766150095769No Hit
GGGAGATTAAGTAGGTGAGTGGTTCGTTTCGAGTTTGGTTTTTTTTTTAT1470.31995472749434095No Hit
GGAAGGTATGTGGGGTTTAGTTTTAAGTTTGGTATCGTTGTTTTTTTTTA1410.3068953508619189No Hit
GTTTAGGATTGGATTGAGGATTAAATTTTTTAAGGTATTTTTTTAAAGAG1130.24595159324394916No Hit
TGGGTTTTAGATATTTGTTTTTTTTGTCGGTTTGTTTTTAATTTTTTAGG990.21547971443496428No Hit
TGTGTGTGTGAATTAAAAGTGTGATAATAAATATTATTTTTATTAGTTGT960.20895002611875327No Hit
TGGGTTTTAGATATTTGTTTTTTTTGGTCGGTTCGTTTTTAATTTTTTAG880.1915375239421905No Hit
GGAAGGTATGTGGGGTTTAGTTTTAAGTTTGGTATCGTCGTTTTTTTTTT870.18936096117012016No Hit
TGTGTGTGTGAATTTAAAAGTGTGATAATAAATATTAGTTTTATTAGTTG830.18065471008183875No Hit
GGGGATTGGGATAAAGGAGTATTATTCTCGGTTTTTGTTTGAGTGATTTC740.16106564513320565No Hit
GGGGATTGGGATAAAGGAGTATTATTTTCGGTTTTTGTTTGAGTGACTTC740.16106564513320565No Hit
TGTGTGTGTGAATTTAAAAGTGTAATAATAAATATTATTTTTATTAGTTG710.1545359568169946No Hit
GTAAGGTTTGGGGTTATTTTAGTGGAGTCGGAGGTGTTACGTTTTGTTGT670.1458297057287132No Hit
TGTGTGTGTGAATTTAAAAGTGTGATAATAAATATTATTTTTATTAGTCG620.13494689186836148No Hit
TGGGTTTTAGATATTTGTTTTTTTTTGGTCGGTTTGTTTTTAATTTTTTA620.13494689186836148No Hit
TGTGTGTGTGATTTAAAAGTGTGATAATAAATATTATTTTTATTAGTTGT610.13277032909629113No Hit
TGTGTGTGTGAATTTAAAGTGTGATAATAAATATTATTTTTATTAGTTGT610.13277032909629113No Hit
TGTGTGTGTGAATTTAAAAGTGTGATAATGAATATTATTTTTATTAGTTG590.12841720355215044No Hit
TGTGTGTGTGAATTTAAAAGTGTGATAATAAATATTATTTTTATTGGTTG580.1262406407800801No Hit
GGAAGGTATGTGGGGTTTAGTTTTAAGTTTGGTATCGTCGTTTTTTTTAG580.1262406407800801No Hit
TGTGTGTGTGAATTTAAAAGTGTGATAATAAATATTATTTTATTAGTTGT580.1262406407800801No Hit
TGGGGAGGGAAGAGTAGATTTTACGATATTTCTGGGGTTTTTAGATAGTT550.11971095246386906No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT540.1175343896917987No Hit
TGTGTGTGTGAATTTAAAAGTGTGATAATAATTATTATTTTTATTAGTTG530.11535782691972836No Hit
TGTGTGTGAATTTAAAAGTGTGATAATAAATATTATTTTTATTAGTTGTA520.11318126414765803No Hit
TGGGTTTTAGATATTTGTTTTTTTTGGTCGGTTTGTTTTTAATTTTTTAT510.11100470137558767No Hit
GGGGATTGGGATAAAGGAGTATTATTTTCGGTTTTTGTTTGGGTGATTTC510.11100470137558767No Hit
TGTGTGTGTGAATTTAAAAGTGTGGTAATAAATATTATTTTTATTAGTTG470.10229845028730629No Hit
TGGGTTTTAGATATTTGTTTTTTTTGGTCGGTTTGTTTCTAATTTTTTAG470.10229845028730629No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)