FastQCFastQC Report
Thu 1 Sep 2022
EGAF00000888409

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000888409
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45944
Sequences flagged as poor quality0
Sequence length151
%GC34

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAATTAACCTAAAAATCCCCACAACCTTAACTCTACCTATATTCCCACA620913.51427825178478No Hit
CACAAAACACCTAAATTATACCCAAAAAAACTAATCCCGCCGAATATCTA493110.73263102907888No Hit
CACAAAACACCTAAATTATACCCAAAAAAACTAATCCCGCCAAATATCTA29556.431742991467875No Hit
CCTAAAACAAACTAATACCACCCACTAAACGAAAACGAAACCCCGAAAAA27465.976841372105172No Hit
ACCAAACAACCAAACTAAACAACGCTAAAAACGAAAAACCCAAATATCCT25335.513233501654188No Hit
CCAAAAAAACCAACAAAAAAACTAAATAAAACCGAAAACTTCTCCATCTT19134.163764582970573No Hit
CACAAAACACCTAAATTATACCCAAAAAAACTAATCCCACCGAATATCTA17973.9112833014104127No Hit
CCTAAAACAAACTAATACCACCCACTAAACAAAAACGAAACCCCGAAAAA10292.2396830924603863No Hit
CCTAAAACAAACTAATACCACCCACTAAACGAAAACGAAACCCCAAAAAA10192.217917464739683No Hit
CCTAAAACAAACTAATACCACCCACTAAACAAAAACGAAACCCCAAAAAA9111.9828486853560856No Hit
AAAAACTAACACACACTTATACCCCCGAAACAACCATAAATACACAAAAA8871.9306111788263973No Hit
CCAAAACTCAACAACCTAAACCCCGAAAATAACTACTAAACTACCTACCG8541.8587846073480758No Hit
AAAATTTAATCCTCAATCCAATCCTAAACCACCAACATCCTCTATTAATC6871.495298624412328No Hit
AACCTTTATTTAATCAAAACTACTTAATTCAAAAAATATCCACATTACTC6631.4430611178826398No Hit
CAAATTAACCTAAAAATCCCCACAACCTTAACTCTACCTATATTCCCACA3790.8249172906146613No Hit
ATATAATACCCACCTTCCAAACCACGAACCCGCAACCCAATCCTAAAAAC3780.822740727842591No Hit
AACCTTTATTTAATCAAAACTACTTAATTCAAAAAATATCCACGTTACTC3280.7139125892390736No Hit
CCCAAACAACCAAACTAAACAACGCTAAAAACGAAAAACCCAAATATCCT2730.5942016367752047No Hit
CACAAAACACCTAAATTATACCCAAAAAAACTAATCCCACCAAATATCTA2540.552846944105868No Hit
CACAAAACACCTAAATTATACCCAAAAAAACTAATCCCGCCGAATATCCA2470.5376110047013756No Hit
ATATAATACCCACCTTCCAAACCACAAACCCGCAACCCAATCCTAAAAAC1760.383075047884381No Hit
AATCTAAAAACCTCCTCTCCAAAACTAAATCTTACACACCCCCAAAATTA1490.32430785303848164No Hit
CACAAAACACCTAAATTATACCCAAAAAACTAATCCCGCCGAATATCTAA1200.2611875326484416No Hit
CTCCAAACTACAAAAAACTCCTTCAAATCACCTATCCACCTCCTAAAACA1090.23724534215566775No Hit
CACAAAACACCTAAATTATACCCAAGAAAACTAATCCCGCCGAATATCTA1070.23289221661152706No Hit
CCTAAAACAAACTAATACCACCCACTAAACGAGAACGAAACCCCAAAAAA1040.22636252829531606No Hit
ACCAAACAACCAAACTAAACAACGCTAAAAACGAAAAACCCAAATATCCG890.19371408671426082No Hit
ATATAATACCCACCTTCCAAACCACGAACCCACAACCCAATCCTAAAAAC860.1871843983980498No Hit
CACAAAACACCTAAATTATACCCAAAAAACTAATCCCGCCAAATATCTAA780.16977189622148703No Hit
AAAATTAACCTAAAAATCCCCACAACCTTAACTCTACCTATACTCCCACA770.16759533344941668No Hit
CACAAAACACCTAAATTATACCCAAAAAAAACTAATCCCGCCGAATATCT700.15235939404492424No Hit
CCTAAAACAAACTAATACCACCCACTAAACGAAAACGGAACCCCGAAAAA670.1458297057287132No Hit
CACAAAACACCTAAATTATACCCAAAAAAATTAATCCCGCCGAATATCTA620.13494689186836148No Hit
GAAATTAACCTAAAAATCCCCACAACCTTAACTCTACCTATATTCCCACA600.1305937663242208No Hit
CCAAAACTCAACAACCTAAACCCCGAAAATAACTACTAAACTACATACCG570.12406407800800974No Hit
CAAAACTAACACACACTTATACCCCCGAAACAACCATAAATACACAAAAA540.1175343896917987No Hit
CAAAACTAACTCTAAAATTTCCTTTTTCAATCTTAACCTAATAACCAACT530.11535782691972836No Hit
TCTCTTTACATTTAATCAAAAACCCAAAAAATTAAACAAAACGTCTAAAA470.10229845028730629No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)