FastQCFastQC Report
Thu 1 Sep 2022
EGAF00000888410

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000888410
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18000
Sequences flagged as poor quality0
Sequence length151
%GC33

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTGTGTGTGAATTTAAAAGTGTGATAATAAATATTATTTTTATTAGTTG469126.061111111111114No Hit
GGGGATTGGGATAAAGGAGTATTATTTTCGGTTTTTGTTTGAGTGATTTC251013.944444444444445No Hit
TGGGTTTTAGATATTTGTTTTTTTTGGTCGGTTTGTTTTTAATTTTTTAG243213.51111111111111No Hit
TGGGGAGGGAAGAGTAGATTTTACGATATTTTTGGGGTTTTTAGATAGTT10916.061111111111111No Hit
GGGAGATTAAGTAGGTGAGTGGTTCGTTTCGAGTTTGGTTTTTTTTTATT3642.022222222222222No Hit
ATTATTTTTTTAGGGAGTTGGGTTGTATTTTATTTGTTGTTTTGTTTTTA2391.3277777777777777No Hit
TTGGTGGGGAGGTTTTGATAGGTTTTGGGTTTGGGTTTAGGACGGTGAGG2331.2944444444444445No Hit
TTGAGGTTATTAGAAGGGAGGTTTTAGTTATATAGGGTGGAAGAATTTAA1730.9611111111111112No Hit
TGGGTTTTAGATATTTGTTTTTTTGGTCGGTTTGTTTTTAATTTTTTAGG1440.8No Hit
GTTGGGATTTTAGTTTATTTTTGTAATTTAAATATTTTTTAGTAAAGTTT1160.6444444444444445No Hit
TGGGTTTTAGATATTTGTTTTTTTTGGTTGGTTTGTTTTTAATTTTTTAG1040.5777777777777777No Hit
GGGGATTGGGATAAAGGAGTATTATCTTCGGTTTTTGTTTGAGTGATTTC830.4611111111111111No Hit
GGGAGATTAAGTAGGTGAGTGGTTCGTTTCGAGTTTGGTTTTTTTTATTT670.37222222222222223No Hit
TGGGTTTTAGATATTTGTTTTTTTTGTCGGTTTGTTTTTAATTTTTTAGG580.32222222222222224No Hit
TGTGTGTGTGAATTAAAAGTGTGATAATAAATATTATTTTTATTAGTTGT550.3055555555555556No Hit
GGAAGGTATGTGGGGTTTAGTTTTAAGTTTGGTATCGTCGTTTTTTTTTA540.3No Hit
TGGGTTTTAGATATTTGTTTTTTTTGGTCGGTTTGTTTTTAATTTTTTAT370.20555555555555557No Hit
GGGGATTGGGATAAAGGAGTATTATTTTCGGTTTTTGTTTGAGTGACTTC370.20555555555555557No Hit
TGTGTGTGTGAATTTAAAAGTGTGATAATAAATATTAGTTTTATTAGTTG360.2No Hit
GGGGATTGGGATAAAGGAGTATTATTTTCGGTTTTTGTCTGAGTGATTTC350.19444444444444445No Hit
TGTGTGTGTGAATTTAAAAGTGTGATAATAAATATTATTTTATTAGTTGT340.18888888888888888No Hit
TGTGTGTGTGATTTAAAAGTGTGATAATAAATATTATTTTTATTAGTTGT330.18333333333333332No Hit
TGTGTGTGTGAATTTAAAAGTGTAATAATAAATATTATTTTTATTAGTTG330.18333333333333332No Hit
GGGAGATTAAGTAGGTGAGTGGTTCGTTTCGAGTTTGGTTTTTTTTTTAT290.16111111111111112No Hit
GGTAGGAGGGGTTGTATAAGGTTTATTTGGAAGTTAGAATTTATTTGTGG270.15No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT260.14444444444444443No Hit
TGGGTTTTAGATATTTGTTTTTTTTTGGTCGGTTTGTTTTTAATTTTTTA240.13333333333333333No Hit
TGTGTGTGTGAATTTAAAAGTGTGATAATAAATATTATTTTTATTAGTCG240.13333333333333333No Hit
ATTATTTTTTTAGGGAGTTGGGTTGTATTTTATTTGTTGTTTTGTTTTCA230.1277777777777778No Hit
TGTGTGTGTGAATTTAAAAGTTGATAATAAATATTATTTTTATTAGTTGT230.1277777777777778No Hit
TGGGTTTAGATATTTGTTTTTTTTGGTCGGTTTGTTTTTAATTTTTTAGG210.11666666666666668No Hit
TGTGTGTGTGAATTTAAAAGTGTGATAATAAATATTATTTTTATTAGCTG210.11666666666666668No Hit
TGGGTTTTAGATATTTGGTTTTTTTGGTCGGTTTGTTTTTAATTTTTTAG210.11666666666666668No Hit
TGTGTGTGTGAATTTAAAAGTGTGATAATAATTATTATTTTTATTAGTTG210.11666666666666668No Hit
TGTGTGTGTGAATTTAAAGTGTGATAATAAATATTATTTTTATTAGTTGT210.11666666666666668No Hit
GGGGATTGGGATAAAGGAGTATTATTCTCGGTTTTTGTTTGAGTGATTTC200.1111111111111111No Hit
GGGGATTGGGATAAAGGAGTATTATTTTCGGTTTTTGCTTGAGTGATTTC190.10555555555555554No Hit
TGTGTGTGTGAATTTAAAAGTGTGATAATAAATATTATTCTTATTAGTTG190.10555555555555554No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)