FastQCFastQC Report
Fri 2 Sep 2022
EGAF00000888530

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000888530
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences168842
Sequences flagged as poor quality0
Sequence length151
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAGAGATTTATTTTGAGTGATTATGGTTCGTGATATAGTTTTAGGAGAT90625.367147984506225No Hit
GTAAGGTTTGGGGTTATTTTAGTGGAGTCGGAGGTGTTACGTTTTGTTGT87735.195982042382819No Hit
GTTTAGGATTGGATTGAGGATTAAATTTTTTAAGGTATTTTTTTAAAGAG82944.912284858032954No Hit
GGAATTGTTTTTGGGAATTTGTAGCGTTGGTTTCGTTAAGTCGGTTGGAA77724.603120076758152No Hit
AAAGATAATAAATTGGGTATTGTTGAAACGTAATTAATTAAATAGTTTTT75094.4473531467288945No Hit
TTGTGGGGATTTAGGTTGTATTATGCGGATGAGGTTTTTAGGTAGTAGGT72614.3004702621385675No Hit
GTTGGGATTTTAGTTTATTTTTGTAATTTAAATATTTTTTAGTAAAGTTC70234.159510074507527No Hit
GGTAGTTGGGTGATTTTTTTATAGGAGTTTAGGTGGTCGTTGACGGTTTT69344.1067980715698695No Hit
AAAATATTAGAGGAAGGAGGGGTTTGGGTTTTGTTGGTTTTGTTTAAAAA61663.6519349450965994No Hit
GGAAGTTAGGTTTTTAGGAGTGTGGTCGGGTGGGGAGTAGGAGAAGGGTT56223.3297402305113653No Hit
TGTGTGTGTGAATTTAAAAGTGTGATAATAAATATTATTTTTATCAGTTG54923.2527451700406296No Hit
GGAGGAGGGTTTAGTAGGTGGCGAGGGGAAGGAGGGGGTTTTAGGGGGCG54403.221947145852335No Hit
GGGAGGTAAGAGAGTGTGGATAGTATAGAAATAGTGTGGGGTCGCGGTGG52413.104085476362516No Hit
GTTTATTGTTTGTTGTGTGTGTGGTGTGTTTATATGTGGTTGGGTATTTG49832.951279894812902No Hit
TTGAGGTTATTAGAAGGGAGGTTTTAGTTATATAGGGTGGAAGAATTTAA47682.8239419101882235No Hit
GAGAGTAGTAGGAGGAGGAGGAGGAGGGGGTAAGCGAGAGGGGGCGCGGT45052.668174980158965No Hit
GGTTAGGAGAATTTTAGGATTTTGGGTTTTTTTTGTAGTAGATTGGAGGA42432.5130003198256357No Hit
TTGGTGGGGAGGTTTTGATAGGTTTTGGGTTTGGGTTTAGGACGGTGAGG37832.2405562596984163No Hit
GATATTTGAAAGGAGGATTGAATGATATGAGGGAGTGGGTCGGAAGGGAG34222.026746899468142No Hit
TAGATGTAATAGGTTTTTTTGGGGGGATTTTTAGGGAGTGGTTGGGTAGA32191.906516151194608No Hit
TGTGTGTGTGAATTTAAAAGTGTGATAATAAATATTATTTTTATTAGTTG31191.8472891816017343No Hit
GGATTTTTTTGATTTTTTTGTTTTGAATTTTTTACGAATTTTTTTTTTAT28471.6861918243091176No Hit
ATTATTTTTTTAGGGAGTTGGGTTGTATTTTATTTGTTGTTTTGTTTTTA7670.45427085677734214No Hit
GGATTTTTTTGATTTTTTTGTTTTGAATTTTTTACGAATTTTTTTTTATT7590.44953269920991223No Hit
GAGAGTAGTAGGAGGAGGAGGAGGGGGTAAGCGAGAGGGGGCGCGGTAGG7380.43709503559540874No Hit
TTGAGGTTATTAGAAGGGAGGTTTTAGTTACATAGGGTGGAAGAATTTAA4280.2534914298574999No Hit
GGTTAGGAGAATTTTAGGATTTTGGGTTTTTTTGTAGTAGATTGGAGGAG4100.24283057533078262No Hit
AAAGATAATAAATTGGGTATTGTTGAAACGTAATTAATTAAATAGTCCTT3610.21380936023027447No Hit
GGATTTTTTTGATTTTTTTGTTTTGAATTTTTTACGAATTTTTTTTTTTA3270.19367219056869736No Hit
GAAGTTGTGGAATTTAGGTAGGAGTGGGGGTTGGGAGAGACCAAGTCTCT2740.16228189668447424No Hit
GGATTTTTTTGATTTTTTTGTTTTGAATTTTTTATGAATTTTTTTTTTAT2510.14865969367811327No Hit
TGTGTGTGTGAATTTAAAAGTGTGATAATAAGTATTATTTTTATTAGTTG2470.14629061489439832No Hit
GGATTTTTTTGATTTTTTTGTTTTGAATTTTTTACGAATTTTTTTTTTTT2440.1445138058066121No Hit
AAAGATAATAAATTGGGTATTGTTGAAACGTAATTAATTAAATAGGTTTT2340.13859110884732473No Hit
GAGAGTAGTAGGAGGAGGAGGAGGGGAGACGTTTATTTTAGTTGGGAGGA2150.12733798462467869No Hit
GTTTAGGATTGGATTGAGGATTAAATTTTTTAAGGTATTTTTTAAAGAGT2120.12556117553689247No Hit
TTGAGGTTATTAGAAGGGAGGTTTTAGTTATATAGGGTGGAAGAACTTAA2100.124376636145035No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1780.10542400587531539No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)