FastQCFastQC Report
Thu 1 Sep 2022
EGAF00000888589

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000888589
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences35803
Sequences flagged as poor quality0
Sequence length301
%GC34

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[FAIL]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACTCCCTTTTCCCTTTAACTTTATTATATCCCTCTAAAAATTTCTAAAAT1338937.39630757199117No Hit
CCCCTAATAAAAACTTCCTTCCACTAACCACGAACATTAAAACCTTCATC415711.610758874954612No Hit
CTCATTCAAAAAACCCAAAAAACCAAACCCAACTCATTCCACACCAACAT15274.265005725777169No Hit
TCCAACCAATAACACTATCTCTAACCTCGATTTCCTCATCTATCCTATAA11863.312571572214619No Hit
CCTCCCTTTTCCCTTTAACTTTATTATATCCCTCTAAAAATTTCTAAAAT9082.536100326788258No Hit
AATAAAAAACTCCCTCTTCCAAATAAAAATTCAAATTTCCTGTAGAACCA5351.4942881881406587No Hit
CACCCAAAATACCTCAACTACCTTACTCTAAACTAACCCCGTTAACTCCC4361.2177750467837891No Hit
AATAAAAAACTCCCTCTTCCAAAAAAAATTCAAATTTCCTGTAGAACCAT3881.083708069156216No Hit
AAAAAAAATCCCAAAACAAACATACGAAATCAAAAAAATACCTAAAATAA3240.9049520989861184No Hit
TCCAACCAATAACACTATCTCTAACCTCGATTTCCTCATCTACCCTATAA2410.6731279501717733No Hit
ACTCCCTTTTCCCTTTAACTTTATTATACCCCTCTAAAAATTTCTAAAAT2330.6507834539005111No Hit
AATAAAAAACTCCCTCTTCCAAAAAAAAATTCAAATTTCCTGTAGAACCA2300.6424042677987878No Hit
CCTAAAAAAACAACACTCCAAACACATATACCCAAACCCTAAATCCCACC2260.6312320196631568No Hit
CAACTACCAAACCCTAAAAAACCACAAACACTCAACACCAACCCATAAAA2080.5809569030528168No Hit
GCTCCCTTTTCCCTTTAACTTTATTATATCCCTCTAAAAATTTCTAAAAT1070.2988576376281317No Hit
CAAAACAAACAACACTAAAACCAAACTAATAAAAAACAAATCCCGCATCG1060.29606457559422394No Hit
ACTCCCTTTTCCCTTTAACTTTATTATATCCCTCTAAAGATTTCTAAAAT1050.29327151356031617No Hit
ACTCCCTTTCCCTTTAACTTTATTATATCCCTCTAAAAATTTCTAAAATC1050.29327151356031617No Hit
ACTCCCTTTTCCCTTAACTTTATTATATCCCTCTAAAAATTTCTAAAATC990.27651314135686955No Hit
ACTCCCTTTTCCCTTTAACTTTATTATATCCCTCTAAAAATTTCTAACAT930.25975476915342294No Hit
ACTCCCTTTTCCCTTTAACTTTATTATATCCCTCTAAAAATTTCTACAAT880.24578945898388405No Hit
CCCCTAATAAAAACTTCCTACCACTAACCACGAACATTAAAACCTTCATC760.21227271457699073No Hit
CCCAACCAATAACACTATCTCTAACCTCGATTTCCTCATCTATCCTATAA700.19551434237354412No Hit
ACTCCCTTTTCCCTTTAACTTTATTATATCCCTCTAAAAATTTCTAAAAC640.17875597017009748No Hit
ACTCCCTTTTCCTTTAACTTTATTATATCCCTCTAAAAATTTCTAAAATC610.17037678406837414No Hit
ACTCCCTTTTCCCTTTAACTTATTATATCCCTCTAAAAATTTCTAAAATC590.16479066000055861No Hit
ACTCCCTTTTCCCTTTAACTTTATTATATCCCCCTAAAAATTTCTAAAAT570.15920453593274306No Hit
ACTCCCTTTTCCCTTTAACTTTATTATATCCCTCTAAAAATTTCTAAGAT560.15641147389883528No Hit
ACTCCCTTTTCCCTTTAACTTTATTATATCCCTCTAAAAATCTCTAAAAT550.15361841186492753No Hit
ACTCCCTTTTCCCTTTAACTTTATTATATCCCTCTAAAAATTTCTAGAAT530.14803228779711197No Hit
ACTCCCTTTTCCCTTTAACTTTATTATATCCCTCTAAAATTTCTAAAATC520.1452392257632042No Hit
ACTCCCTTTTCCCTTTAACTTTATTATATCCCTCTAAGAATTTCTAAAAT520.1452392257632042No Hit
CCCCTAATAAAAACTTCCATCCACTAACCACGAACATTAAAACCTTCATC500.13965310169538867No Hit
ACTCCCTTTTCCCTTTAACTTTATTATATCCCTCTAAAAATTTCTAAACT480.1340669776275731No Hit
ACTCCTTTTCCCTTTAACTTTATTATATCCCTCTAAAAATTTCTAAAATC470.13127391559366533No Hit
ACTCCCTTTTCCCTTTAACTTTATTATATCCCTCTAAAAATTTCTAAAGT470.13127391559366533No Hit
ACTCCCTTTTCCCTTTAACTTTATTATATCCCTCTAGAAATTTCTAAAAT470.13127391559366533No Hit
ACTCCCTTTTCCCTTTAACTTTATTATATCCCTCTAAAAATTCCTAAAAT470.13127391559366533No Hit
TCCAACCAATAACACTATCTCTAACCTAAACCTATAAACTCACAAAATCA470.13127391559366533No Hit
CCCCTAATAAAAACTTCCTTCCACTAACCACGAACATTGAAACCTTCATC450.1256877915258498No Hit
TCTTTCCTCTTACCCAACACTTTATAAATAAATAATCACCAAAACCGCAC440.12289472949194202No Hit
ACTCCCTTTTCCCTTTAACTTTATTATATCCCTCTAAAACTTTCTAAAAT430.12010166745803424No Hit
ACTCCCTTTTCCCTTTAACTTTATTATATCTCTCTAAAAATTTCTAAAAT430.12010166745803424No Hit
ACTCCCTTTTCCCTTTAACTTTATTATATCCCTCTAACAATTTCTAAAAT420.11730860542412648No Hit
ACTCCCTTTTCCCTTTAATTTATTATATCCCTCTAAAAATTTCTAAAATC400.11172248135631092No Hit
ACTCCCTTTTCCCTTTAACTTTATTATGTCCCTCTAAAAATTTCTAAAAT390.10892941932240316No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)