FastQCFastQC Report
Fri 10 Feb 2023
EGAF00000888717

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000888717
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences116863506
Sequences flagged as poor quality0
Sequence length76
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGAACGTCTGAGGTTATCAATAAGCTCCTAGTCCAGACGCCATGGGTCAT8083350.6916915533922112No Hit
CACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACC6647450.568821715822902No Hit
CTCAAGGGCACCTTTGCCCAGCTGAGTGAACTGCACTGTGACAAGCTGCA5178140.4430929874720685No Hit
CTGAGGTTATCAATAAGCTCCTAGTCCAGACGCCATGGGTCATTTCACAG4163690.35628658958768533No Hit
CTGAGATTATCAATAAGCTCCTAGTCCAGACGCCATGGGTCATTTCACAG3770180.3226139732621063No Hit
GGAACGTCTGAGATTATCAATAAGCTCCTAGTCCAGACGCCATGGGTCAT3077490.26334055047090577No Hit
GTCTGAGGTTATCAATAAGCTCCTAGTCCAGACGCCATGGGTCATTTCAC3014110.2579171294073618No Hit
CCCAGAGGTTCTTTGACAGCTTTGGCAACCTGTCCTCTGCCTCTGCCATC2937950.25140012486019375No Hit
CTGCACTGTGACAAGCTGCATGTGGATCCTGAGAACTTCAAGCTCCTGGG2719940.2327450282040999No Hit
CCCAAAGTCAAGGCACATGGCAAGAAGGTGCTGACTTCCTTGGGAGATGC2568510.21978717633201933No Hit
GTGCTGGTGACCGTTTTGGCAATCCATTTCGGCAAAGAATTCACCCCTGA2453780.20996974025407042No Hit
CAGAGGTTCTTTGACAGCTTTGGCAACCTGTCCTCTGCCTCTGCCATCAT2111710.18069884023503455No Hit
CCAAAGTCAAGGCACATGGCAAGAAGGTGCTGACTTCCTTGGGAGATGCC2060380.17630653661888254No Hit
CTCCTGGTTGTCTACCCATGGACCCAGAGGTTCTTTGACAGCTTTGGCAA2056920.1760104647211252No Hit
GAACGTCTGAGGTTATCAATAAGCTCCTAGTCCAGACGCCATGGGTCATT2038980.17447534048824445No Hit
CCATAAAGCACCTGGATGATCTCAAGGGCACCTTTGCCCAGCTGAGTGAA1956970.1674577519520936No Hit
GTTTTGGCAATCCATTTCGGCAAAGAATTCACCCCTGAGGTGCAGGCTTC1913090.16370294418515907No Hit
CCTGTCCTCTGCCTCTGCCATCATGGGCAACCCCAAAGTCAAGGCACATG1799260.1539625210285921No Hit
CTTCAAGCTCCTGGGAAATGTGCTGGTGACCGTTTTGGCAATCCATTTCG1758650.15048752687601208No Hit
CTGGAACGTCTGAGGTTATCAATAAGCTCCTAGTCCAGACGCCATGGGTC1723760.14750199262377084No Hit
GTGGAAGATGCTGGAGGAGAAACCCTGGGAAGGCTCCTGGTTGTCTACCC1689920.14460630677980857No Hit
CAATAAGCTCCTAGTCCAGACGCCATGGGTCATTTCACAGAGGAGGACAA1672650.1431285143884011No Hit
GTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGG1670720.14296336445699312No Hit
CGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGG1667150.1426578798688446No Hit
GAGAACTTCAAGCTCCTGGGAAATGTGCTGGTGACCGTTTTGGCAATCCA1659870.14203493090477706No Hit
CCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGAC1659770.1420263739135124No Hit
GTCTGAGATTATCAATAAGCTCCTAGTCCAGACGCCATGGGTCATTTCAC1516020.12972569897055802No Hit
GGTGAATGTGGAAGATGCTGGAGGAGAAACCCTGGGAAGGCTCCTGGTTG1415220.12110025177577677No Hit
CTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTC1406590.12036178342963628No Hit
CATAAAGCACCTGGATGATCTCAAGGGCACCTTTGCCCAGCTGAGTGAAC1360950.11645637261644368No Hit
CGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGG1360270.11639818507584396No Hit
TGAGAACTTCAAGCTCCTGGGAAATGTGCTGGTGACCGTTTTGGCAATCC1334180.11416566605489313No Hit
CTGAGAACTTCAAGCTCCTGGGAAATGTGCTGGTGACCGTTTTGGCAATC1331820.11396372106104707No Hit
CTTCAAGCTCCTAAGCCACTGCCTGCTGGTGACCCTGGCCGCCCACCTCC1329960.1138045610235243No Hit
CCTTTGCCCAGCTGAGTGAACTGCACTGTGACAAGCTGCATGTGGATCCT1296590.11094909303850596No Hit
CAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAA1281320.1096424404723918No Hit
GGCTACTATCACAAGCCTGTGGGGCAAGGTGAATGTGGAAGATGCTGGAG1265500.10828872445432194No Hit
TCTGAGGTTATCAATAAGCTCCTAGTCCAGACGCCATGGGTCATTTCACA1245370.10656620211274512No Hit
CAAGGCTACTATCACAAGCCTGTGGGGCAAGGTGAATGTGGAAGATGCTG1243580.10641303196910763No Hit
CACCAGGTTGCCTAAGGAGGGGTGAACCGGCCCAGGTCGGAAACGGAGCA1234920.10567199652558772No Hit
GAACGTCTGAGATTATCAATAAGCTCCTAGTCCAGACGCCATGGGTCATT1191650.10196938640536764No Hit
GGTCATTTCACAGAGGAGGACAAGGCTACTATCACAAGCCTGTGGGGCAA1171540.10024857546204373No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)