FastQCFastQC Report
Sat 11 Mar 2023
EGAF00000888718

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000888718
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences93666963
Sequences flagged as poor quality0
Sequence length76
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTGACTTTGGGGTTGCCCATGATGGCAGAGGCAGAGGACAGGTTGCCAA3821670.40800618250001336No Hit
GTGCTTTATGGCATCTCCCAAGGAAGTCAGCACCTTCTTGCCATGTGCCT3665890.39137491839038274No Hit
GTGATCTCTTAGCAGAATAGATTTATTATTTGTATTGCTTGCAGAATAAA2805740.29954424806108No Hit
GTGCAGTTCACTCAGCTGGGCAAAGGTGCCCTTGAGATCATCCAGGTGCT2628410.28061227948641826No Hit
CCAGGGTTTCTCCTCCAGCATCTTCCACATTCACCTTGCCCCACAGGCTT2366210.2526194854849729No Hit
CTCAGGATCCACATGCAGCTTGTCACAGTGCAGTTCACTCAGCTGGGCAA2296690.24519744490915119No Hit
CCCAGGGTTTCTCCTCCAGCATCTTCCACATTCACCTTGCCCCACAGGCT2295380.245057587700372No Hit
CTCTTAGCAGAATAGATTTATTATTTGTATTGCTTGCAGAATAAAGCCTA2284140.2438575914968013No Hit
GTGAATTCTTTGCCGAAATGGATTGCCAAAACGGTCACCAGCACATTTCC2242410.23940244544920283No Hit
CCTTGACTTTGGGGTTGCCCATGATGGCAGAGGCAGAGGACAGGTTGCCA2238270.23896045396496948No Hit
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT1961990.20946446187221848No Hit
CCAGGAGCTTGAAGTTCTCAGGATCCACATGCAGCTTGTCACAGTGCAGT1811930.1934438719871808No Hit
GCCAGGAAGCCTGCACCTCAGGGGTGAATTCTTTGCCGAAATGGATTGCC1777580.18977662380278093No Hit
CCATGATGGCAGAGGCAGAGGACAGGTTGCCAAAGCTGTCAAAGAACCTC1712720.18285209054979182No Hit
CAGGGTTTCTCCTCCAGCATCTTCCACATTCACCTTGCCCCACAGGCTTG1700660.18156455013919903No Hit
CAGCACATTTCCCAGGAGCTTGAAGTTCTCAGGATCCACATGCAGCTTGT1641330.1752304064774685No Hit
CCCATGATGGCAGAGGCAGAGGACAGGTTGCCAAAGCTGTCAAAGAACCT1632800.17431973320198288No Hit
GTCACAGTGCAGTTCACTCAGCTGGGCAAAGGTGCCCTTGAGATCATCCA1622620.17323290390017237No Hit
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA1564780.1670578344682746No Hit
CCCAGGAGCTTGAAGTTCTCAGGATCCACATGCAGCTTGTCACAGTGCAG1550800.16556531249977646No Hit
CCAGCACATTTCCCAGGAGCTTGAAGTTCTCAGGATCCACATGCAGCTTG1545130.16495997633658732No Hit
GGTGCTTTATGGCATCTCCCAAGGAAGTCAGCACCTTCTTGCCATGTGCC1416850.1512646459990381No Hit
CCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATAT1405330.15003475665160618No Hit
CTGGAGGACAGGGCACTGGCCACTCCAGTCACCATCTTCTGCCAGGAAGC1403660.14985646540071978No Hit
CTCCAGCATCTTCCACATTCACCTTGCCCCACAGGCTTGTGATAGTAGCC1396060.14904508006734454No Hit
GTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTGA1361330.14533726261627594No Hit
GATCTCTTAGCAGAATAGATTTATTATTTGTATTGCTTGCAGAATAAAGC1346520.143756128828475No Hit
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATG1303850.1392006272264854No Hit
CAGGTGCTTTATGGCATCTCCCAAGGAAGTCAGCACCTTCTTGCCATGTG1283090.13698426413163411No Hit
AGCAGAATAGATTTATTATTTGTATTGCTTGCAGAATAAAGCCTATCCTT1262930.13483195777362825No Hit
AGCACATTTCCCAGGAGCTTGAAGTTCTCAGGATCCACATGCAGCTTGTC1250850.13354228213847394No Hit
GGCAGAGGCAGAGGACAGGTTGCCAAAGCTGTCAAAGAACCTCTGGGTCC1240740.13246292612262875No Hit
GTCACCAGCACATTTCCCAGGAGCTTGAAGTTCTCAGGATCCACATGCAG1233060.13164299989100747No Hit
GGGAGGAGGGCCCGTTGGGAGGCCCAGCGGGCAGGAGGAACGGCTACCGA1230760.13139744906643339No Hit
GCCTTGACTTTGGGGTTGCCCATGATGGCAGAGGCAGAGGACAGGTTGCC1211080.12929638809790384No Hit
CACCAGCACATTTCCCAGGAGCTTGAAGTTCTCAGGATCCACATGCAGCT1206810.12884051765402066No Hit
CCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATT1205830.1287358916505065No Hit
CAGCAGAATAGATTTATTATTTGTATTGCTTGCAGAATAAAGCCTATCCT1194730.12755084201886635No Hit
CCAGCATCTTCCACATTCACCTTGCCCCACAGGCTTGTGATAGTAGCCTT1180510.12603269735563005No Hit
CTTAGCAGAATAGATTTATTATTTGTATTGCTTGCAGAATAAAGCCTATC1179530.1259280713521159No Hit
GCTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGG1176140.12556615078893932No Hit
CACCATCTTCTGCCAGGAAGCCTGCACCTCAGGGGTGAATTCTTTGCCGA1110460.11855407332892814No Hit
GCCGAAATGGATTGCCAAAACGGTCACCAGCACATTTCCCAGGAGCTTGA1106500.11813129886574844No Hit
GCTTGCAGAATAAAGCCTATCCTTGAAAGCTCTGCATCATGGGCAGTGAG1101800.1176295210937927No Hit
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACC1091390.11651813670952478No Hit
GGTCGAAGTGCGGGAAGTAGGTCTTGGTGGTGGGGAAGGACAGGAACATC1085650.11590532726037034No Hit
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT1070180.11425373106203945No Hit
CTATCCTTGAAAGCTCTGCATCATGGGCAGTGAGCTCAGTGGTATCTGGA1069020.11412988803747165No Hit
CTTGAAAGCTCTGCATCATGGGCAGTGAGCTCAGTGGTATCTGGAGGACA1054550.11258505306721645No Hit
GTCACCATCTTCTGCCAGGAAGCCTGCACCTCAGGGGTGAATTCTTTGCC1052170.11233096134439632No Hit
GCCTGCACCTCAGGGGTGAATTCTTTGCCGAAATGGATTGCCAAAACGGT1040820.11111922140573725No Hit
GGTGAATTCTTTGCCGAAATGGATTGCCAAAACGGTCACCAGCACATTTC1040220.11105516466889186No Hit
GCCTATCCTTGAAAGCTCTGCATCATGGGCAGTGAGCTCAGTGGTATCTG1027680.10971637886882273No Hit
CTCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATC1026030.10954022284249784No Hit
GGACAGGTTGCCAAAGCTGTCAAAGAACCTCTGGGTCCATGGGTAGACAA981020.10473489996681114No Hit
GCGGGAAGTAGGTCTTGGTGGTGGGGAAGGACAGGAACATCCTCTCCAGG979110.10453098602118659No Hit
CCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTG944130.10079647826309902No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)