FastQCFastQC Report
Sat 11 Mar 2023
EGAF00000888719

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000888719
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences93666963
Sequences flagged as poor quality0
Sequence length76
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGAACGTCTGAGGTTATCAATAAGCTCCTAGTCCAGACGCCATGGGTCAT9692951.034831245676237No Hit
CACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACC5073630.5416669696016513No Hit
CTCAAGGGCACCTTTGCCCAGCTGAGTGAACTGCACTGTGACAAGCTGCA4044420.4317872460538728No Hit
GGAACGTCTGAGATTATCAATAAGCTCCTAGTCCAGACGCCATGGGTCAT4010410.42815629668701866No Hit
GTCTGAGGTTATCAATAAGCTCCTAGTCCAGACGCCATGGGTCATTTCAC2706070.2889033564587762No Hit
CTGAGGTTATCAATAAGCTCCTAGTCCAGACGCCATGGGTCATTTCACAG2613440.27901406390212524No Hit
CTGAGATTATCAATAAGCTCCTAGTCCAGACGCCATGGGTCATTTCACAG2478050.2645596612329579No Hit
GTGCTGGTGACCGTTTTGGCAATCCATTTCGGCAAAGAATTCACCCCTGA2370690.253097775786752No Hit
CTGCACTGTGACAAGCTGCATGTGGATCCTGAGAACTTCAAGCTCCTGGG2220860.23710174098417175No Hit
CCCAGAGGTTCTTTGACAGCTTTGGCAACCTGTCCTCTGCCTCTGCCATC2209540.23589320388235496No Hit
CCCAAAGTCAAGGCACATGGCAAGAAGGTGCTGACTTCCTTGGGAGATGC2083030.22238684091849975No Hit
GAACGTCTGAGGTTATCAATAAGCTCCTAGTCCAGACGCCATGGGTCATT2076780.2217195832430267No Hit
GTGGAAGATGCTGGAGGAGAAACCCTGGGAAGGCTCCTGGTTGTCTACCC2053690.21925446648675906No Hit
GGTGAATGTGGAAGATGCTGGAGGAGAAACCCTGGGAAGGCTCCTGGTTG1891510.20193993051744402No Hit
CAGAGGTTCTTTGACAGCTTTGGCAACCTGTCCTCTGCCTCTGCCATCAT1877400.20043352958929606No Hit
GGCAAGGTGAATGTGGAAGATGCTGGAGGAGAAACCCTGGGAAGGCTCCT1832730.19566450553115508No Hit
GTTTTGGCAATCCATTTCGGCAAAGAATTCACCCCTGAGGTGCAGGCTTC1676440.17897879319520588No Hit
CCTGTCCTCTGCCTCTGCCATCATGGGCAACCCCAAAGTCAAGGCACATG1605770.17143397720709702No Hit
CCATAAAGCACCTGGATGATCTCAAGGGCACCTTTGCCCAGCTGAGTGAA1568720.16747847370689278No Hit
CCAAAGTCAAGGCACATGGCAAGAAGGTGCTGACTTCCTTGGGAGATGCC1557160.16624431391033784No Hit
GAGAACTTCAAGCTCCTGGGAAATGTGCTGGTGACCGTTTTGGCAATCCA1543160.1647496567172782No Hit
GGTCATTTCACAGAGGAGGACAAGGCTACTATCACAAGCCTGTGGGGCAA1530910.16344183167335105No Hit
GTCATTTCACAGAGGAGGACAAGGCTACTATCACAAGCCTGTGGGGCAAG1507520.1609446865486607No Hit
GGCTACTATCACAAGCCTGTGGGGCAAGGTGAATGTGGAAGATGCTGGAG1471860.15713758115548168No Hit
GTCTGAGATTATCAATAAGCTCCTAGTCCAGACGCCATGGGTCATTTCAC1421830.151796316914855No Hit
CAATAAGCTCCTAGTCCAGACGCCATGGGTCATTTCACAGAGGAGGACAA1390630.14846536659889356No Hit
GGGTCATTTCACAGAGGAGGACAAGGCTACTATCACAAGCCTGTGGGGCA1371030.1463728465286101No Hit
GTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGG1370200.1462842347093073No Hit
CTTCAAGCTCCTGGGAAATGTGCTGGTGACCGTTTTGGCAATCCATTTCG1311360.1400024040493338No Hit
CCACAGACTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGAC1309560.13981023383879757No Hit
GAACGTCTGAGATTATCAATAAGCTCCTAGTCCAGACGCCATGGGTCATT1298300.13860810241066532No Hit
CTCCTGGTTGTCTACCCATGGACCCAGAGGTTCTTTGACAGCTTTGGCAA1290970.13782554260887053No Hit
CATAAAGCACCTGGATGATCTCAAGGGCACCTTTGCCCAGCTGAGTGAAC1289060.13762162866324598No Hit
CGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGG1280220.1366778594070569No Hit
GCCATAAAGCACCTGGATGATCTCAAGGGCACCTTTGCCCAGCTGAGTGA1233600.13170065095416833No Hit
GGACAAGGCTACTATCACAAGCCTGTGGGGCAAGGTGAATGTGGAAGATG1220010.13024976586461973No Hit
GGAAGATGCTGGAGGAGAAACCCTGGGAAGGCTCCTGGTTGTCTACCCAT1186020.1266209517223271No Hit
GGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAGGA1164080.12427861037834652No Hit
GGCACATGGCAAGAAGGTGCTGACTTCCTTGGGAGATGCCATAAAGCACC1144040.12213911536770973No Hit
CTGGAACGTCTGAGGTTATCAATAAGCTCCTAGTCCAGACGCCATGGGTC1141360.1218529952764669No Hit
CAAGGCTACTATCACAAGCCTGTGGGGCAAGGTGAATGTGGAAGATGCTG1120020.11957471066933172No Hit
CGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGG1116110.11915727426755579No Hit
CCTTTGCCCAGCTGAGTGAACTGCACTGTGACAAGCTGCATGTGGATCCT1091020.11647863505513678No Hit
GTTATCAATAAGCTCCTAGTCCAGACGCCATGGGTCATTTCACAGAGGAG1086520.11599820952879619No Hit
GGGCAACCCCAAAGTCAAGGCACATGGCAAGAAGGTGCTGACTTCCTTGG1058190.11297366393741196No Hit
GGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGA1027060.1096501869074158No Hit
CTTCAAGCTCCTAAGCCACTGCCTGCTGGTGACCCTGGCCGCCCACCTCC1025070.10943773206354519No Hit
CTGAGAACTTCAAGCTCCTGGGAAATGTGCTGGTGACCGTTTTGGCAATC1005100.10730571033887369No Hit
CTCAGAGAGAACCCACCATGGTGCTGTCTCCTGCCGACAAGACCAACGTC972530.10382849714044855No Hit
GGATGATCTCAAGGGCACCTTTGCCCAGCTGAGTGAACTGCACTGTGACA969900.10354771511060948No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)