FastQCFastQC Report
Thu 9 Feb 2023
EGAF00000888764

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000888764
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences108242856
Sequences flagged as poor quality0
Sequence length76
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTT3193410.2950227033920835No Hit
CTCAGACCGCGTTCTCTCCCTCTCACTCCCCAATACGGAGAGAAGAACGA2560500.23655140806705988No Hit
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACC1464870.13533179501472134No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)