FastQCFastQC Report
Wed 27 Sep 2023
EGAF00000896158

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000896158
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences65025541
Sequences flagged as poor quality0
Sequence length75
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGGCCGATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAA1374630.21139847187122981Illumina Paired End PCR Primer 2 (97% over 37bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)