FastQCFastQC Report
Mon 13 May 2024
EGAF00000896172

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000896172
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences100842967
Total Bases7.5 Gbp
Sequences flagged as poor quality0
Sequence length75
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATGTCAATCTCGTA1906770.18908309193242995Illumina Paired End PCR Primer 2 (97% over 41bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)