FastQCFastQC Report
Wed 22 May 2024
EGAF00000896321

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000896321
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences141259078
Total Bases10.5 Gbp
Sequences flagged as poor quality0
Sequence length75
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA16612581.1760362757004543No Hit
CTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGT3223620.2282062183642456No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC1940430.13736674679414232No Hit

[OK]Adapter Content

Adapter graph