FastQCFastQC Report
Wed 22 May 2024
EGAF00000896322

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000896322
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences149850021
Total Bases11.2 Gbp
Sequences flagged as poor quality0
Sequence length75
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTTCTTCGAATGTGTGGTAGGGTGGGGGGCATCCATATAGTCACTCCAG3979970.2655968930428111No Hit
CTTCGAATGTGTGGTAGGGTGGGGGGCATCCATATAGTCACTCCAGGTTT3207980.2140793827449647No Hit
GTTCTTCGAATGTGTGGTAGGGTGGGGGGCATCCATATAGTCACTCCAGG2718330.18140337798150857No Hit
GAAGAAAGTTAGATTTACGCCGATGAATATGATAGTGAAATGGATTTTGG2229990.14881479395988875No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2222690.14832764020767136No Hit
ACGGGTTCTTCGAATGTGTGGTAGGGTGGGGGGCATCCATATAGTCACTC2201100.14688686630214084No Hit
CGGGTTCTTCGAATGTGTGGTAGGGTGGGGGGCATCCATATAGTCACTCC1739580.11608807181948944No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)