FastQCFastQC Report
Thu 23 May 2024
EGAF00000896323

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000896323
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences149850021
Total Bases11.2 Gbp
Sequences flagged as poor quality0
Sequence length75
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2368180.15803668122275405No Hit
CACATGCCTACCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC1986970.13259724534840073No Hit
CTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCTAAGT1928950.12872537401913345No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)