FastQCFastQC Report
Mon 4 Sep 2023
EGAF00000901374

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000901374
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences49482782
Sequences flagged as poor quality0
Sequence length100
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACAGCAGGAAATCTCGTAT701970.14186146607520975TruSeq Adapter, Index 1 (97% over 37bp)
CTCAGATTTAATCATAATACATGAATTAAATTAATCAAATTAAGGAACAG567430.11467221062873952No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)