FastQCFastQC Report
Mon 5 Sep 2022
EGAF00000902401

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000902401
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34474656
Sequences flagged as poor quality0
Sequence length75
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGACCCAGATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAA949130.2753123918045767Illumina Paired End PCR Primer 2 (97% over 39bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)