FastQCFastQC Report
Thu 12 Jan 2023
EGAF00000905713

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000905713
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33704429
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCTGAGATGCTTTTAAATGTGATGTTATAAGCCTAAGGCAGCTTGACTT762460.22621952740988432No Hit
CTCGGCAAAGCAGGTCTCCTTATCGTCAGCCTTGCAGCACTTCTCTACAA473720.1405512610820376No Hit
CTCCTCGGCAAAGCAGGTCTCCTTATCGTCAGCCTTGCAGCACTTCTCTA455080.13502083064513568No Hit
CCTCGGCAAAGCAGGTCTCCTTATCGTCAGCCTTGCAGCACTTCTCTACA424930.12607541875282918No Hit
CTTGGATTAAGGCGACAGCGATTTCTAGGATAGTCAGTAGAATTAGAATT407930.12103157125136284No Hit
GGCGTTTTCTCATGCAACACACATAACTGGTTCAGGACCACGGATAGATA376300.11164704792951691No Hit
GGCAAAATGATTAAAGAAATTTATGTTTTTTAGACAGGGTGTTGGCTTTA366110.10862370639775562No Hit
CAGGGTGTTGGCTTTACACCAACGAAAAAGAAAAACAGATGAATAAGCTT357560.10608694780142991No Hit
CTGAGATGCTTTTAAATGTGATGTTATAAGCCTAAGGCAGCTTGACTTGC356490.10576948210574935No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)