FastQCFastQC Report
Sun 14 May 2023
EGAF00000905723

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000905723
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41522949
Sequences flagged as poor quality0
Sequence length101
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCTGAGATGCTTTTAAATGTGATGTTATAAGCCTAAGGCAGCTTGACTT803150.19342315980495509No Hit
CTTGGATTAAGGCGACAGCGATTTCTAGGATAGTCAGTAGAATTAGAATT778180.18740961775137888No Hit
CCCGTATCGAAGGCCTTTTTGGACAGGTGGTGTGTGGTGGCCTTGGTATG651250.15684097967126565No Hit
CTGAGATGCTTTTAAATGTGATGTTATAAGCCTAAGGCAGCTTGACTTGC597160.14381444824643838No Hit
GTGGAAGTGAGCTACAACGTAGTACGTGTCGTGTAGTACGATGTCTAGTG551480.1328133028316462No Hit
AAATGAATGAGCCTACAGATGATAGGATGTTTCATGTGGTGTATGCATCG519200.1250392885148885No Hit
GTTGGCTTTACACCAACGAAAAAGAAAAACAGATGAATAAGCTTTTGATC505870.12182901556438104No Hit
ATTTTTTATTAATTGAAGCACAGAGAAAAGAGGCAAAATGATTAAAGAAA497360.11977954648645017No Hit
CAGGGTGTTGGCTTTACACCAACGAAAAAGAAAAACAGATGAATAAGCTT490550.11813948956274757No Hit
CTTTAGTGTTGTGTATGGCTATCATTTGTTTTGAGGTTAGTTTGATTAGT466960.11245829384613312No Hit
AGAGAAATGAATGAGCCTACAGATGATAGGATGTTTCATGTGGTGTATGC450800.10856647007417514No Hit
GGCAAATACAGCTCCTATTGATAGGACATAGTGGAAGTGAGCTACAACGT439250.10578487573221257No Hit
GTCGTGTAGTACGATGTCTAGTGATGAGTTTGCTAATACAATGCCAGTCA433920.10450124821336751No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)