FastQCFastQC Report
Thu 1 Jun 2023
EGAF00000905724

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000905724
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences41522949
Sequences flagged as poor quality0
Sequence length101
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTAAAACCCAGCCCATGACCCCTAACAGGGGCCCTCTCAGCCCTCCTAAT591050.14234297279800623No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC587220.14142059129759788No Hit
CCTAGACCAAACCTACGCCAAAATCCATTTCACTATCATATTCATCGGCG578420.13930128132276925No Hit
CACATTTAAAAGCATCTCAGCCTACCATGAGAATAAGAGAAAGAAAATGA502420.12099814972197664No Hit
CCAAAATCCATTTCACTATCATATTCATCGGCGTAAATCTAACTTTCTTC458730.11047625735831046No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)