FastQCFastQC Report
Sun 14 May 2023
EGAF00000905749

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000905749
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33802038
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCTTTTGTTGCCTTGGGCTTGTGTTTCACGAGCTCAACAAGTGCAGTTT605490.17912825256275966No Hit
CTGAGATGCTTTTAAATGTGATGTTATAAGCCTAAGGCAGCTTGACTTGC375640.11112939403239531No Hit
GGCTGAGATGCTTTTAAATGTGATGTTATAAGCCTAAGGCAGCTTGACTT363520.10754381141160779No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)