FastQCFastQC Report
Thu 5 Jan 2023
EGAF00000905777

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000905777
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39175947
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGCTGTTAGAGAAATGAATGAGCCTACAGATGATAGGATGTTTCATGTG878180.22416305596901076No Hit
CTCTTTTGTTGCCTTGGGCTTGTGTTTCACAAGCTCAACAAGTGCAGTTT743440.18976950321073285No Hit
CTTGGATTAAGGCGACAGCGATTTCTAGGATAGTCAGTAGAATTAGAATT689770.1760697705661078No Hit
CTCCTCGGCAAAGCAGGTCTCCTTATCGTCAGCCTTGCAGCACTTCTCTA688080.17563838341929552No Hit
CTAGATTTTATGTATACGGGTTCTTCGAATGTGTGGTAGGGTGGGGGGCA667010.17026008331081313No Hit
GTTTGGATGTAAAGTGAAATATTAGTTGGCGGATGAAGCAGATAGTGAGG553980.1414081962077394No Hit
GGCTGAGATGCTTTTAAATGTGATGTTATAAGCCTAAGGCAGCTTGACTT544490.13898579146025491No Hit
CCCGTATCGAAGGCCTTTTTGGACAGGTGGTGTGTGGTGGCCTTGGTATG541620.13825319908667427No Hit
GTCGGAAATGGTGAAGGGAGACTCGAAGTACTCTGAGGCTTGTAGGAGGG523420.13360749135177255No Hit
CTCGGCAAAGCAGGTCTCCTTATCGTCAGCCTTGCAGCACTTCTCTACAA509480.13004918553723793No Hit
GTTGTTTTCTATTAGACTATGGTGAGCTCAGGTGATTGATACTCCTGATG497270.12693247721618572No Hit
AGAGAAATGAATGAGCCTACAGATGATAGGATGTTTCATGTGGTGTATGC491170.1253753993489934No Hit
GGCGGATGAAGCAGATAGTGAGGAAAGTTGAGCCAATAATGACGTGAAGT481010.12278197129478453No Hit
GGGGGCTTCAATCGGGAGTACTACTCGATTGTCAACGTCAAGGAGTCGCA446910.1140776507585126No Hit
CTCATCAATAGATGGAGACATACAGAAATAGTCAAACCACATCTACAAAA421660.10763236942300336No Hit
GGGAAGGTTAATGGTTGATATTGCTAGGGTGGCGTTTCCAATTAGGTGCA415160.10597318808910987No Hit
GGATGACATAACTATTAGTGGTAGGTTAGTTGTTTGTAGGGCTCATGGTA410300.10473263096869108No Hit
GGCCAATTGATTTGATGGTAAGGGAGGGATCGTTGACCTCGTCTGTTATG407030.10389793512840928No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)