FastQCFastQC Report
Sun 14 May 2023
EGAF00000905778

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00000905778
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39175947
Sequences flagged as poor quality0
Sequence length101
%GC47

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTAGACCAAACCTACGCCAAAATCCATTTCACTATCATATTCATCGGCG439740.11224744611789472No Hit
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC424530.108364961796584No Hit
CCTCAGAGTACTTCGAGTCTCCCTTCACCATTTCCGACGGCATCTACGGC417210.10649646835595322No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)